RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 WDR6Q9NNW5 1121 aaKnown RBP17.88■□□□□ 0.45
VPS29-207ENST00000549970 BLOC1S4Q9NUP1 217 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 ZDHHC7Q9NXF8 308 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 LARSQ9P2J5 1176 aaKnown RBP17.88■□□□□ 0.45
VPS29-207ENST00000549970 CLUHO75153 1309 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 I3L4J1 428 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 ADAM12O43184 909 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 N4BP1O75113 896 aaKnown RBP17.87■□□□□ 0.45
VPS29-207ENST00000549970 TOM1L1O75674 476 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 PDGFBP01127 241 aaPredicted RBP17.87■□□□□ 0.45
VPS29-207ENST00000549970 GBP2P32456 591 aaPredicted RBP17.87■□□□□ 0.45
VPS29-207ENST00000549970 MATR3P43243 847 aaKnown RBP eCLIP17.87■□□□□ 0.45
VPS29-207ENST00000549970 BRCC3P46736 316 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 MCM6Q14566 821 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 PDXDC1Q6P996 788 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 CD300LGQ6UXG3 332 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 STAMQ92783 540 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 BICD1Q96G01 975 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 BACH2Q9BYV9 841 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 RHOBTB2Q9BYZ6 727 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 KCNH6Q9H252 994 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 SLC38A7Q9NVC3 462 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 FBXW11Q9UKB1 542 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 ODF2LQ9ULJ1 636 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 CLIC4Q9Y696 253 aa17.87■□□□□ 0.45
VPS29-207ENST00000549970 PODXLO00592 558 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 ZMYND10O75800 440 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 FAM13AO94988 1023 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 KRT18P05783 430 aaKnown RBP17.86■□□□□ 0.45
VPS29-207ENST00000549970 FGFR3P22607 806 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 TKTP29401 623 aaKnown RBP17.86■□□□□ 0.45
VPS29-207ENST00000549970 MARCKSP29966 332 aaPredicted RBP17.86■□□□□ 0.45
VPS29-207ENST00000549970 VCPP55072 806 aaKnown RBP17.86■□□□□ 0.45
VPS29-207ENST00000549970 NCKAP1LP55160 1127 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 IER5LQ5T953 404 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 LIN9Q5TKA1 542 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 ZPBP2Q6X784 338 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 HAUS6Q7Z4H7 955 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 MYCT1Q8N699 235 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 RAD54LQ92698 747 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 PRKD2Q9BZL6 878 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 FOXD4L1Q9NU39 408 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 CNTN3Q9P232 1028 aa17.86■□□□□ 0.45
VPS29-207ENST00000549970 H0YCG3 227 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 K7ENM7 598 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 CLDN3O15551 220 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 MEFVO15553 781 aaPredicted RBP17.85■□□□□ 0.45
VPS29-207ENST00000549970 TRAPPC3O43617 180 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 KCNE1P15382 129 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 SYT1P21579 422 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 OR1D2P34982 312 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 RESTQ13127 1097 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 SPECC1Q5M775 1068 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 FAM173BQ6P4H8 233 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 GET4Q7L5D6 327 aaPredicted RBP17.85■□□□□ 0.45
VPS29-207ENST00000549970 KMT2EQ8IZD2 1858 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 C18orf25Q96B23 403 aaPredicted RBP17.85■□□□□ 0.45
VPS29-207ENST00000549970 DDX27Q96GQ7 796 aaKnown RBP17.85■□□□□ 0.45
VPS29-207ENST00000549970 MYADMQ96S97 322 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 ZHX3Q9H4I2 956 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 KCNK12Q9HB15 430 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 MTRRQ9UBK8 725 aa17.85■□□□□ 0.45
VPS29-207ENST00000549970 DOCK6Q96HP0 2047 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 PAPLNO95428 1278 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 C8AP07357 584 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 LIG4P49917 911 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 CEBPZQ03701 1054 aaKnown RBP17.84■□□□□ 0.45
VPS29-207ENST00000549970 MCL1Q07820 350 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 PTPAQ15257 358 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 SLC10A6Q3KNW5 377 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 PPM1LQ5SGD2 360 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 LARP4BQ92615 738 aaKnown RBP17.84■□□□□ 0.45
VPS29-207ENST00000549970 EPSTI1Q96J88 318 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 CCSER1Q9C0I3 900 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 HAPLN2Q9GZV7 340 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 PARVGQ9HBI0 331 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 CDY1Q9Y6F8 540 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 DOCK8Q8NF50 2099 aa17.84■□□□□ 0.45
VPS29-207ENST00000549970 PDCD11Q14690 1871 aaKnown RBP17.84■□□□□ 0.45
VPS29-207ENST00000549970 HNRNPDLO14979 420 aaKnown RBP17.83■□□□□ 0.44
VPS29-207ENST00000549970 CCL16O15467 120 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 TBCAO75347 108 aaKnown RBP17.83■□□□□ 0.44
VPS29-207ENST00000549970 CXCL8P10145 99 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 ZNF131P52739 623 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 NHLH1Q02575 133 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 TDGQ13569 410 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 RAB33AQ14088 237 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 RSPO2Q6UXX9 243 aaPredicted RBP17.83■□□□□ 0.44
VPS29-207ENST00000549970 ANKS3Q6ZW76 656 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 USP49Q70CQ1 688 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 PRSS33Q8NF86 280 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 SLC7A14Q8TBB6 771 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 TBX20Q9UMR3 447 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 POLIQ9UNA4 740 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 NUB1Q9Y5A7 615 aa17.83■□□□□ 0.44
VPS29-207ENST00000549970 TRAK2O60296 914 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 AVPR2P30518 371 aa17.82■□□□□ 0.44
VPS29-207ENST00000549970 HOXD11P31277 338 aaPredicted RBP17.82■□□□□ 0.44
VPS29-207ENST00000549970 RPL9P32969 192 aaKnown RBP17.82■□□□□ 0.44
VPS29-207ENST00000549970 TNFSF9P41273 254 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms