RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 HS1BP3Q53T59 392 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 TREML2Q5T2D2 321 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 C12orf60Q5U649 245 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 E4F1Q66K89 784 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-208ENST00000497026 OTUD7BQ6GQQ9 843 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 IQCEQ6IPM2 695 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 ZSCAN25Q6NSZ9 544 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 EEPD1Q7L9B9 569 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 CTU1Q7Z7A3 348 aaKnown RBP5.74□□□□□ -1.49
CSMD3-208ENST00000497026 CHD1LQ86WJ1 897 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 CPA5Q8WXQ8 436 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 DDX1Q92499 740 aaKnown RBP5.74□□□□□ -1.49
CSMD3-208ENST00000497026 DYNLL2Q96FJ2 89 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 TMEM169Q96HH4 297 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 SLKQ9H2G2 1235 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-208ENST00000497026 CHMP5Q9NZZ3 219 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 ZHX1Q9UKY1 873 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-208ENST00000497026 SLC4A4Q9Y6R1 1079 aa5.74□□□□□ -1.49
CSMD3-208ENST00000497026 A0A0G2JMZ2 1700 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 ROBO3Q96MS0 1386 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 BRCA2P51587 3418 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 SCG5P05408 212 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 ZFYP08048 801 aaPredicted RBP5.73□□□□□ -1.49
CSMD3-208ENST00000497026 HMGCS2P54868 508 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 BACE1P56817 501 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 PPP2R2AP63151 447 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 SP3Q02447 781 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 KCNAB2Q13303 367 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 CTR9Q6PD62 1173 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 SASS6Q6UVJ0 657 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 C17orf99Q6UX52 265 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 ETV3LQ6ZN32 361 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 GADL1Q6ZQY3 521 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 CCDC129Q6ZRS4 1044 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 OTOP1Q7RTM1 612 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 CARFQ8N187 725 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 CXorf38Q8TB03 319 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 CD99L2Q8TCZ2 262 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 SEC14L1Q92503 715 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 EVI5LQ96CN4 794 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 BORCS6Q96GS4 357 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 GBP4Q96PP9 640 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 FSD1Q9BTV5 496 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 ARHGAP39Q9C0H5 1083 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 AS3MTQ9HBK9 375 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 ATP8A2Q9NTI2 1148 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 ARPP21Q9UBL0 812 aaPredicted RBP5.73□□□□□ -1.49
CSMD3-208ENST00000497026 CPA4Q9UI42 421 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 AGTPBP1Q9UPW5 1226 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 SLC45A1Q9Y2W3 748 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 PLXNB2O15031 1838 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 LAMA4Q16363 1823 aa5.73□□□□□ -1.49
CSMD3-208ENST00000497026 DOCK3Q8IZD9 2030 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 RBBP6Q7Z6E9 1792 aaKnown RBP5.72□□□□□ -1.49
CSMD3-208ENST00000497026 MYH4Q9Y623 1939 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 A0A0D9SFI3 127 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 A0A1W2PQU0 124 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 A0A1W2PRG0 241 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 SH3D21A4FU49 640 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 CPP00450 1065 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 AKR1B1P15121 316 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 GSPT1P15170 499 aaKnown RBP5.72□□□□□ -1.49
CSMD3-208ENST00000497026 MCM5P33992 734 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 LTBRP36941 435 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 SARSP49591 514 aaKnown RBP5.72□□□□□ -1.49
CSMD3-208ENST00000497026 LACTBP83111 547 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-208ENST00000497026 RTP5Q14D33 572 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 SEPT2Q15019 361 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 ABCB5Q2M3G0 1257 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 CERKLQ49MI3 558 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-208ENST00000497026 SBK1Q52WX2 424 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 MROH9Q5TGP6 573 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 VPS53Q5VIR6 699 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 C16orf86Q6ZW13 317 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 FASTKD5Q7L8L6 764 aaKnown RBP5.72□□□□□ -1.49
CSMD3-208ENST00000497026 FRMD5Q7Z6J6 570 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 ACER1Q8TDN7 264 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 C1orf159Q96HA4 380 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 ERO1AQ96HE7 468 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 FAM227BQ96M60 508 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 PPP1R9BQ96SB3 815 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 PARK7Q99497 189 aaKnown RBP5.72□□□□□ -1.49
CSMD3-208ENST00000497026 IER2Q9BTL4 223 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 BDH2Q9BUT1 245 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 CLDND1Q9NY35 253 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 TRIM17Q9Y577 477 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 DUSP10Q9Y6W6 482 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 X6R8D5 127 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 HTTP42858 3142 aa5.72□□□□□ -1.49
CSMD3-208ENST00000497026 CENPFP49454 3210 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 C19orf81C9J6K1 198 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 CELA3BP08861 270 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 GNAT2P19087 354 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 HOXA7P31268 230 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-208ENST00000497026 LSAMPQ13449 338 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 DDR2Q16832 855 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 SLC35F1Q5T1Q4 408 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 GIMAP6Q6P9H5 292 aa5.71□□□□□ -1.5
CSMD3-208ENST00000497026 FBXO46Q6PJ61 603 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-208ENST00000497026 ZNF589Q86UQ0 364 aaPredicted RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms