RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 ZNF627Q7L945 461 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 UBE3BQ7Z3V4 1068 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 PROKR1Q8TCW9 393 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 HDAC10Q969S8 669 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 HTRA2O43464 458 aaPredicted RBP7.55□□□□□ -1.2
SF3B1-212ENST00000496458 HMGA2P52926 109 aa7.55□□□□□ -1.2
SF3B1-212ENST00000496458 C3orf36Q3SXR2 165 aa7.55□□□□□ -1.2
SF3B1-212ENST00000496458 TMX3Q96JJ7 454 aa7.55□□□□□ -1.2
SF3B1-212ENST00000496458 SLC13A1Q9BZW2 595 aa7.55□□□□□ -1.2
SF3B1-212ENST00000496458 TDP1Q9NUW8 608 aa7.55□□□□□ -1.2
SF3B1-212ENST00000496458 FBXO34Q9NWN3 711 aa7.55□□□□□ -1.2
SF3B1-212ENST00000496458 LIMCH1Q9UPQ0 1083 aa7.55□□□□□ -1.2
SF3B1-212ENST00000496458 IPPQ9Y573 584 aa7.55□□□□□ -1.2
SF3B1-212ENST00000496458 GAGE12BA1L429 117 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 GAGE12HA6NDE8 117 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 CCDC154A6NI56 674 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 LPXNO60711 386 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 PPFIA4O75335 1185 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 NDUFA10O95299 355 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 SLC6A2P23975 617 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 TARDBPQ13148 414 aaKnown RBP eCLIP7.54□□□□□ -1.2
SF3B1-212ENST00000496458 IL10RAQ13651 578 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 UBXN2BQ14CS0 331 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 UAP1L1Q3KQV9 507 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 LY6G5CQ5SRR4 150 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 AGAP9Q5VTM2 703 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 RSPH3Q86UC2 560 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 RPUSD2Q8IZ73 545 aaKnown RBP7.54□□□□□ -1.2
SF3B1-212ENST00000496458 AMER2Q8N7J2 671 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 OR56A1Q8NGH5 318 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 COA7Q96BR5 231 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 MYEOVQ96EZ4 313 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 SERPINB13Q9UIV8 391 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 ATP11BQ9Y2G3 1177 aa7.54□□□□□ -1.2
SF3B1-212ENST00000496458 EDNRBP24530 442 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 CDC42EP1Q00587 391 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 CREMQ03060 361 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 BEAN1Q3B7T3 259 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 TSHZ3Q63HK5 1081 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 RHOT2Q8IXI1 618 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 KAT5Q92993 513 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 REXO4Q9GZR2 422 aaKnown RBP7.53□□□□□ -1.2
SF3B1-212ENST00000496458 MAP3K2Q9Y2U5 619 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 HS3ST4Q9Y661 456 aa7.53□□□□□ -1.2
SF3B1-212ENST00000496458 hCG_2014768A0A024R1R8 64 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 CENPVL1A0A0U1RR11 272 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 TCRBV7S2A1N4TA0A589 114 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 KIAA0391O15091 583 aaKnown RBP7.52□□□□□ -1.21
SF3B1-212ENST00000496458 ALAS1P13196 640 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 PTPAQ15257 358 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 CPEB3Q8NE35 698 aaKnown RBP7.52□□□□□ -1.21
SF3B1-212ENST00000496458 C11orf54Q9H0W9 315 aaPredicted RBP7.52□□□□□ -1.21
SF3B1-212ENST00000496458 KLHL11Q9NVR0 708 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 ANKFY1Q9P2R3 1169 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 SPEF1Q9Y4P9 236 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 FPGT-TNNI3KV9GXZ4 949 aa7.52□□□□□ -1.21
SF3B1-212ENST00000496458 ADKP55263 362 aaKnown RBP7.51□□□□□ -1.21
SF3B1-212ENST00000496458 ANAPC15P60006 121 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 CTXN1P60606 82 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 TGFB2P61812 414 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 ATP2B3Q16720 1220 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 Q6ZPA2 131 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 LDLRAD3Q86YD5 345 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 ULK2Q8IYT8 1036 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 DCBLD1Q8N8Z6 715 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 ZSWIM1Q9BR11 485 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 FAM30AQ9NZY2 134 aa7.51□□□□□ -1.21
SF3B1-212ENST00000496458 CDHR4A6H8M9 788 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 UNC119BA6NIH7 251 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 TMEM200CA6NKL6 621 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 SGTAO43765 313 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 PRSS23O95084 383 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 SNUPNO95149 360 aaKnown RBP7.5□□□□□ -1.21
SF3B1-212ENST00000496458 ZRANB2O95218 330 aaKnown RBP eCLIP7.5□□□□□ -1.21
SF3B1-212ENST00000496458 HLA-DOAP06340 250 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 RECQLP46063 649 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-212ENST00000496458 DPTQ07507 201 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 ZBTB46Q86UZ6 589 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 VRK3Q8IV63 474 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 MAPKAPK5Q8IW41 473 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 IFI44Q8TCB0 444 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 GSTO2Q9H4Y5 243 aa7.5□□□□□ -1.21
SF3B1-212ENST00000496458 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-212ENST00000496458 MARCH11A6NNE9 402 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 KRT4P19013 534 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 GCSHP23434 173 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 DDX6P26196 483 aaKnown RBP eCLIP7.49□□□□□ -1.21
SF3B1-212ENST00000496458 INHBCP55103 352 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 RESTQ13127 1097 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 DACT2Q5SW24 774 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 PPP4R3AQ6IN85 833 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 MIER2Q8N344 545 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 CHFRQ96EP1 664 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 CLPTM1LQ96KA5 538 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 PRRX2Q99811 253 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 ADAM2Q99965 735 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 TTPALQ9BTX7 342 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 RNPEPQ9H4A4 650 aa7.49□□□□□ -1.21
SF3B1-212ENST00000496458 AATKQ6ZMQ8 1374 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 A0A1B0GTW7 788 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms