RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PCDHB7Q9Y5E2 793 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 WNT6Q9Y6F9 365 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 KCNAB3O43448 404 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 PPFIA2O75334 1257 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 ECI2O75521 394 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 ARIH2O95376 493 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 PAPLNO95428 1278 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 STAU1O95793 577 aaKnown RBP5.92□□□□□ -1.46
HMGB1-207ENST00000468384 MYBP10242 640 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 HOXC8P31273 242 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 CASRP41180 1078 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 SARSP49591 514 aaKnown RBP5.92□□□□□ -1.46
HMGB1-207ENST00000468384 FBXO47Q5MNV8 452 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 LRRC55Q6ZSA7 311 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 TSHZ1Q6ZSZ6 1077 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 CHSY3Q70JA7 882 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 C11orf74Q86VG3 221 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 PRIMA1Q86XR5 153 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 CLEC10AQ8IUN9 316 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 CAMKK1Q8N5S9 505 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 LPIN2Q92539 896 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 NSUN4Q96CB9 384 aaKnown RBP5.92□□□□□ -1.46
HMGB1-207ENST00000468384 KCTD15Q96SI1 283 aaPredicted RBP5.92□□□□□ -1.46
HMGB1-207ENST00000468384 EMILIN2Q9BXX0 1053 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 NT5C3AQ9H0P0 336 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 BRD9Q9H8M2 597 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 AGO3Q9H9G7 860 aaKnown RBP5.92□□□□□ -1.46
HMGB1-207ENST00000468384 PRDM16Q9HAZ2 1276 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 INVSQ9Y283 1065 aa5.92□□□□□ -1.46
HMGB1-207ENST00000468384 RYR3Q15413 4870 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 CHL1O00533 1208 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 KLK10O43240 276 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 SEMA7AO75326 666 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 RECQL4O94761 1208 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 GH1P01241 217 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 P4HBP07237 508 aaKnown RBP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 FAM87AP0C7U9 286 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 JUPP14923 745 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 CD52P31358 61 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 GP2P55259 537 aaKnown RBP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 PCBP4P57723 403 aaKnown RBP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 ARHGAP1Q07960 439 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 TSNAXIP1Q2TAA8 658 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 PKN3Q6P5Z2 889 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 ELMSAN1Q6PJG2 1045 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 DHRS13Q6UX07 377 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 CHST3Q7LGC8 479 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 ATCAYQ86WG3 371 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 PTRH1Q86Y79 214 aaKnown RBP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 PRPF38AQ8NAV1 312 aaKnown RBP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 SETD7Q8WTS6 366 aaKnown RBP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 SCG3Q8WXD2 468 aaKnown RBP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 CLSTN3Q9BQT9 956 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 AMNQ9BXJ7 453 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 UNKQ9C0B0 810 aaKnown RBP5.91□□□□□ -1.46
HMGB1-207ENST00000468384 SLC38A10Q9HBR0 1119 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 RNF146Q9NTX7 359 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 CYP39A1Q9NYL5 469 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 WDR81Q562E7 1941 aa5.91□□□□□ -1.46
HMGB1-207ENST00000468384 VPS13CQ709C8 3753 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 TNFRSF10BO14763 440 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 HNRNPRO43390 633 aaKnown RBP5.9□□□□□ -1.46
HMGB1-207ENST00000468384 DDAH2O95865 285 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 SERPINF2P08697 491 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 CNPP09543 421 aaKnown RBP5.9□□□□□ -1.46
HMGB1-207ENST00000468384 FGFR1P11362 822 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 BCKDHBP21953 392 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 MPSTP25325 297 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 CD97P48960 835 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 ALDH5A1P51649 535 aaPredicted RBP5.9□□□□□ -1.46
HMGB1-207ENST00000468384 POLGP54098 1239 aaPredicted RBP5.9□□□□□ -1.46
HMGB1-207ENST00000468384 OAZ1P54368 228 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 INHBCP55103 352 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 MGAT3Q09327 533 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 MYO1EQ12965 1108 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 CCDC157Q569K6 752 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 INTS6LQ5JSJ4 861 aaKnown RBP5.9□□□□□ -1.46
HMGB1-207ENST00000468384 ZNF484Q5JVG2 852 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 C12orf40Q86WS4 652 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 SYNPOQ8N3V7 929 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 MIB2Q96AX9 1013 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 HHIPQ96QV1 700 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 NOL10Q9BSC4 688 aaKnown RBP5.9□□□□□ -1.46
HMGB1-207ENST00000468384 RBCK1Q9BYM8 510 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 NUCKS1Q9H1E3 243 aaKnown RBP5.9□□□□□ -1.46
HMGB1-207ENST00000468384 SLC25A18Q9H1K4 315 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 CAPN10Q9HC96 672 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 AATFQ9NY61 560 aaKnown RBP eCLIP5.9□□□□□ -1.46
HMGB1-207ENST00000468384 DPP7Q9UHL4 492 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 MAP4K5Q9Y4K4 846 aa5.9□□□□□ -1.46
HMGB1-207ENST00000468384 THADAQ6YHU6 1953 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 KMT2CQ8NEZ4 4911 aaKnown RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 ZNF862O60290 1169 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 FAM13AO94988 1023 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 SMIM10L2AP0DMW4 78 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 SMIM10L2BP0DMW5 78 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 BUD31P41223 144 aaPredicted RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 EPHA4P54764 986 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 PTH1RQ03431 593 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms