RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 SLC26A4O43511 780 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 TRAPPC3O43617 180 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 MAPTP10636 758 aaKnown RBP20.64■□□□□ 0.89
SF3A1-205ENST00000463818 KCNE1P15382 129 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 OR1D2P34982 312 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 BRCC3P46736 316 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 TCF15Q12870 199 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 CUL4AQ13619 759 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 RAB33AQ14088 237 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 BRAPQ7Z569 592 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 C3orf58Q8NDZ4 430 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 RSAD2Q8WXG1 361 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 CALML4Q96GE6 196 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 SNX27Q96L92 541 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 SLC38A7Q9NVC3 462 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 EPS15L1Q9UBC2 864 aa20.64■□□□□ 0.89
SF3A1-205ENST00000463818 I3L4J1 428 aa20.63■□□□□ 0.89
SF3A1-205ENST00000463818 TOM1L1O75674 476 aa20.63■□□□□ 0.89
SF3A1-205ENST00000463818 BMP15O95972 392 aa20.63■□□□□ 0.89
SF3A1-205ENST00000463818 TKTP29401 623 aaKnown RBP20.63■□□□□ 0.89
SF3A1-205ENST00000463818 MRE11P49959 708 aa20.63■□□□□ 0.89
SF3A1-205ENST00000463818 DHX8Q14562 1220 aaKnown RBP20.63■□□□□ 0.89
SF3A1-205ENST00000463818 LIN9Q5TKA1 542 aa20.63■□□□□ 0.89
SF3A1-205ENST00000463818 RSPO2Q6UXX9 243 aaPredicted RBP20.63■□□□□ 0.89
SF3A1-205ENST00000463818 LRRC15Q8TF66 581 aa20.63■□□□□ 0.89
SF3A1-205ENST00000463818 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.63■□□□□ 0.89
SF3A1-205ENST00000463818 MTRRQ9UBK8 725 aa20.63■□□□□ 0.89
SF3A1-205ENST00000463818 PIEZO1Q92508 2521 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 PODXLO00592 558 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 MEFVO15553 781 aaPredicted RBP20.62■□□□□ 0.89
SF3A1-205ENST00000463818 C8AP07357 584 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 HNRNPA1P09651 372 aaKnown RBP eCLIP20.62■□□□□ 0.89
SF3A1-205ENST00000463818 GRIN1Q05586 938 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 SF3A1Q15459 793 aaKnown RBP20.62■□□□□ 0.89
SF3A1-205ENST00000463818 SLC10A6Q3KNW5 377 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 SEZ6Q53EL9 994 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 PPM1LQ5SGD2 360 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 ZPBP2Q6X784 338 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 GRASPQ7Z6J2 395 aaPredicted RBP20.62■□□□□ 0.89
SF3A1-205ENST00000463818 GPBP1Q86WP2 473 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 C18orf25Q96B23 403 aaPredicted RBP20.62■□□□□ 0.89
SF3A1-205ENST00000463818 MFSD1Q9H3U5 465 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 BLOC1S4Q9NUP1 217 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 CNTN3Q9P232 1028 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 LARSQ9P2J5 1176 aaKnown RBP20.62■□□□□ 0.89
SF3A1-205ENST00000463818 ANKFY1Q9P2R3 1169 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 DUSP12Q9UNI6 340 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 BACE2Q9Y5Z0 518 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 CDY1Q9Y6F8 540 aa20.62■□□□□ 0.89
SF3A1-205ENST00000463818 H0YCG3 227 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 CLDN3O15551 220 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 LAMP2P13473 410 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 FSHRP23945 695 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 RPL9P32969 192 aaKnown RBP20.61■□□□□ 0.89
SF3A1-205ENST00000463818 LONP1P36776 959 aaKnown RBP20.61■□□□□ 0.89
SF3A1-205ENST00000463818 MCL1Q07820 350 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 NOLC1Q14978 699 aaKnown RBP eCLIP20.61■□□□□ 0.89
SF3A1-205ENST00000463818 UVSSAQ2YD98 709 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 AXDND1Q5T1B0 1012 aaPredicted RBP20.61■□□□□ 0.89
SF3A1-205ENST00000463818 ASTLQ6HA08 431 aaPredicted RBP20.61■□□□□ 0.89
SF3A1-205ENST00000463818 ANKS3Q6ZW76 656 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 GET4Q7L5D6 327 aaPredicted RBP20.61■□□□□ 0.89
SF3A1-205ENST00000463818 HAUS6Q7Z4H7 955 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 SLC44A3Q8N4M1 653 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 NXPE3Q969Y0 559 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 PHOX2BQ99453 314 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 ODF2LQ9ULJ1 636 aa20.61■□□□□ 0.89
SF3A1-205ENST00000463818 PLXNA3P51805 1871 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 VPS37CA5D8V6 355 aaPredicted RBP20.6■□□□□ 0.89
SF3A1-205ENST00000463818 CCL16O15467 120 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 NARSO43776 548 aaKnown RBP20.6■□□□□ 0.89
SF3A1-205ENST00000463818 MATR3P43243 847 aaKnown RBP eCLIP20.6■□□□□ 0.89
SF3A1-205ENST00000463818 NUBP1P53384 320 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 NCKAP1LP55160 1127 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 NTHL1P78549 312 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 MCM6Q14566 821 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 KARSQ15046 597 aaKnown RBP20.6■□□□□ 0.89
SF3A1-205ENST00000463818 MYCT1Q8N699 235 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 TMEM105Q8N8V8 129 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 SLC7A14Q8TBB6 771 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 REEP2Q9BRK0 252 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 HAPLN2Q9GZV7 340 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 FBXL21Q9UKT6 434 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 POLIQ9UNA4 740 aa20.6■□□□□ 0.89
SF3A1-205ENST00000463818 XYLBO75191 536 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 FAM13AO94988 1023 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 PLCG1P19174 1290 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 PDCP20941 246 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 HOXA9P31269 272 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 CLCN5P51795 746 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 FLCNQ8NFG4 579 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 RASSF8Q8NHQ8 419 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 RAD54LQ92698 747 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 BICD1Q96G01 975 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 NUB1Q9Y5A7 615 aa20.59■□□□□ 0.89
SF3A1-205ENST00000463818 GALR2O43603 387 aaPredicted RBP20.58■□□□□ 0.89
SF3A1-205ENST00000463818 KRT18P05783 430 aaKnown RBP20.58■□□□□ 0.89
SF3A1-205ENST00000463818 CLTAP09496 248 aa20.58■□□□□ 0.89
SF3A1-205ENST00000463818 NPR3P17342 541 aa20.58■□□□□ 0.89
SF3A1-205ENST00000463818 VARS2Q5ST30 1063 aaKnown RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms