RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 SMG5Q9UPR3 1016 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 UBE4BO95155 1302 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SLX4Q8IY92 1834 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 K7ENM7 598 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SEC24CP53992 1094 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 STXBP2Q15833 593 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 HYIQ5T013 277 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 RARS2Q5T160 578 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FAM160B1Q5W0V3 765 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 ALKBH5Q6P6C2 394 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SYDE1Q6ZW31 735 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FASTKD5Q7L8L6 764 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 CATSPER3Q86XQ3 398 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 DDI1Q8WTU0 396 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SHISA4Q96DD7 197 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 CATSPER2Q96P56 530 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PNMA5Q96PV4 448 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 IRX2Q9BZI1 471 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PDGFDQ9GZP0 370 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 ZFYVE28Q9HCC9 887 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 NRBP2Q9NSY0 501 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FBXO28Q9NVF7 368 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 RGPD3A6NKT7 1758 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 RGPD4Q7Z3J3 1758 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 RASA4BC9J798 803 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FZD9O00144 591 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PDXKO00764 312 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 RASA4O43374 803 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 KDM1AO60341 852 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 COBLO75128 1261 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 ARFIP2P53365 341 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PSMC5P62195 406 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 ASPHQ12797 758 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 DMP1Q13316 513 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 STAT4Q14765 748 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 TAF1CQ15572 869 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FSCBQ5H9T9 825 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SPOUT1Q5T280 376 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PCNX4Q63HM2 1172 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FOXR2Q6PJQ5 311 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SFR1Q86XK3 245 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 CRLF3Q8IUI8 442 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PRMT1Q99873 361 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 TRIM15Q9C019 465 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SUGCTQ9HAC7 445 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 MID2Q9UJV3 735 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 MYH15Q9Y2K3 1946 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 TCP11X1B4DZS4 312 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 NFKBIEO00221 500 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 STRNO43815 780 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 ACTN1P12814 892 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SNX16P57768 344 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 AP1B1Q10567 949 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 BFSP1Q12934 665 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 WASHC2DQ5SRD0 308 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 KRT39Q6A163 491 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 IRGCQ6NXR0 463 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 KLC3Q6P597 504 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 ADAT2Q7Z6V5 191 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 RASSF3Q86WH2 238 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 HACE1Q8IYU2 909 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FAM133AQ8N9E0 248 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 GTF3C2Q8WUA4 911 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 LBHD1Q9BQE6 289 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 LXNQ9BS40 222 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PTPN22Q9Y2R2 807 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 TTI1O43156 1089 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 KRT3P12035 628 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 BMP6P22004 513 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 TPP2P29144 1249 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-202ENST00000460333 PPP2R5CQ13362 524 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 ARHGAP44Q17R89 818 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 KLHL38Q2WGJ6 581 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 FAM102BQ5T8I3 360 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 CENPPQ6IPU0 288 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 TTI2Q6NXR4 508 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 CDAN1Q8IWY9 1227 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 FUKQ8N0W3 1084 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 KLHL23Q8NBE8 558 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 CDKL2Q92772 493 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 HAS1Q92839 578 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 GPRASP2Q96D09 838 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 FAM161BQ96MY7 647 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 CYTH2Q99418 400 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 TRIM56Q9BRZ2 755 aaKnown RBP6.56□□□□□ -1.36
VPS13D-202ENST00000460333 DCLRE1BQ9H816 532 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 SLC38A10Q9HBR0 1119 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 BLOC1S4Q9NUP1 217 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 EHD2Q9NZN4 543 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 TSC22D4Q9Y3Q8 395 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 PFASO15067 1338 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 ESYT3A0FGR9 886 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 LRRC10BA6NIK2 292 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 EIF3DO15371 548 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS13D-202ENST00000460333 CYP11B2P19099 503 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 EPHX2P34913 555 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 HSPA13P48723 471 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 SP4Q02446 784 aa6.56□□□□□ -1.36
VPS13D-202ENST00000460333 CACNB1Q02641 598 aaPredicted RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms