RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 NUP85Q9BW27 656 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 HEMGNQ9BXL5 484 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 ISCUQ9H1K1 167 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 RAB20Q9NX57 234 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 PNMA2Q9UL42 364 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 TRPC6Q9Y210 931 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 SYNGAP1Q96PV0 1343 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 SPOPO43791 374 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 OPA1O60313 960 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 GJB1P08034 283 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 SLCO1A2P46721 670 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 VPS41P49754 854 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 NLRP11P59045 1033 aaKnown RBP10.16□□□□□ -0.78
CUX1-206ENST00000437600 FKBP1BP68106 108 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 GPC5P78333 572 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 FMO1Q01740 532 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 PPFIA1Q13136 1202 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 BIRC3Q13489 604 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 KIF22Q14807 665 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 KRT39Q6A163 491 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 MIS18BP1Q6P0N0 1132 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 HELQQ8TDG4 1101 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 MAGOHBQ96A72 148 aaKnown RBP10.16□□□□□ -0.78
CUX1-206ENST00000437600 ZNF653Q96CK0 615 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 SH3GL2Q99962 352 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 LAMA3Q16787 3333 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 PTPRJQ12913 1337 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 BTNL10A8MVZ5 291 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 MAFGO15525 162 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 FARP2O94887 1054 aaPredicted RBP10.15□□□□□ -0.78
CUX1-206ENST00000437600 SHBGP04278 402 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 TCF7P36402 384 aaPredicted RBP10.15□□□□□ -0.78
CUX1-206ENST00000437600 OSTNP61366 133 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 KCTD2Q14681 263 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 TTC27Q6P3X3 843 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 CCDC25Q86WR0 208 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 SYCE1Q8N0S2 351 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 LRRC71Q8N4P6 559 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 KCTD17Q8N5Z5 321 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 SMC1BQ8NDV3 1235 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 MDM1Q8TC05 714 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 FBXO25Q8TCJ0 367 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 ATG4AQ8WYN0 398 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 CDHR1Q96JP9 859 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 PWWP2AQ96N64 755 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 PCYT2Q99447 389 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 TARS2Q9BW92 718 aaKnown RBP10.15□□□□□ -0.78
CUX1-206ENST00000437600 HAPLN2Q9GZV7 340 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 ANKEF1Q9NU02 776 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 NOCTQ9UK39 431 aaKnown RBP10.15□□□□□ -0.78
CUX1-206ENST00000437600 A0A0G2JMZ2 1700 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 MYPNQ86TC9 1320 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 ZSWIM8A7E2V4 1837 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 GSTTP1A0A1W2PQM5 241 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 EDN1P05305 212 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 DR1Q01658 176 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 EMC2Q15006 297 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 ALS2CLQ60I27 953 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 XRRA1Q6P2D8 792 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 ZBTB33Q86T24 672 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 SAMD3Q8N6K7 520 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 FGD4Q96M96 766 aa10.15□□□□□ -0.78
CUX1-206ENST00000437600 NOVA2Q9UNW9 492 aaKnown RBP10.15□□□□□ -0.78
CUX1-206ENST00000437600 UTP11Q9Y3A2 253 aaKnown RBP10.15□□□□□ -0.78
CUX1-206ENST00000437600 CLDN3O15551 220 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 SSR1P43307 286 aaKnown RBP10.15□□□□□ -0.79
CUX1-206ENST00000437600 CDR1P51861 262 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 NCKAP1LP55160 1127 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 NBPF20Q3BBV1 942 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 FAM71AQ8IYT1 594 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 FBXL13Q8NEE6 735 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 DNERQ8NFT8 737 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 ASAP3Q8TDY4 903 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 CYFIP2Q96F07 1278 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 MMP19Q99542 508 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 ATP6V0A4Q9HBG4 840 aa10.15□□□□□ -0.79
CUX1-206ENST00000437600 WDR81Q562E7 1941 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 FAM155AB1AL88 458 aaPredicted RBP10.14□□□□□ -0.79
CUX1-206ENST00000437600 MYO1FO00160 1098 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 DGAT1O75907 488 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 TOMM70O94826 608 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 CCDC172P0C7W6 258 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 SRGAP2CP0DJJ0 459 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 TAF1CQ15572 869 aaPredicted RBP10.14□□□□□ -0.79
CUX1-206ENST00000437600 RASGEF1CQ8N431 466 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 PRELID2Q8N945 189 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 CEP120Q8N960 986 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 CCDC26Q8TAB7 109 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 ZNF564Q8TBZ8 553 aaPredicted RBP10.14□□□□□ -0.79
CUX1-206ENST00000437600 IWS1Q96ST2 819 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 TCHPQ9BT92 498 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 KLHL11Q9NVR0 708 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 FBXO40Q9UH90 709 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 USTQ9Y2C2 406 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 DAAM1Q9Y4D1 1078 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 GRIN2DO15399 1336 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 UMODL1Q5DID0 1318 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 TMEM88BA6NKF7 163 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 GOLGA8KD6RF30 607 aa10.14□□□□□ -0.79
CUX1-206ENST00000437600 NOP56O00567 594 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms