RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SAAL1Q96ER3 474 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 GMLQ99445 158 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 GPRC5CQ9NQ84 441 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 ASIC3Q9UHC3 531 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 DENND3A2RUS2 1198 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 DLATP10515 647 aaKnown RBP12.06□□□□□ -0.48
USP4-205ENST00000431357 UNGP13051 313 aaPredicted RBP12.06□□□□□ -0.48
USP4-205ENST00000431357 SCP2P22307 547 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 SPP2Q13103 211 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 PGM5Q15124 567 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 UGCGQ16739 394 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 EXOC3L1Q86VI1 746 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 CCDC25Q86WR0 208 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 MCOLN2Q8IZK6 566 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 GPD1LQ8N335 351 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 MTMR14Q8NCE2 650 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 ATL2Q8NHH9 583 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 UHMK1Q8TAS1 419 aaKnown RBP12.06□□□□□ -0.48
USP4-205ENST00000431357 ACP6Q9NPH0 428 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 HAUS2Q9NVX0 235 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 ANAPC7Q9UJX3 599 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 PSME4Q14997 1843 aa12.06□□□□□ -0.48
USP4-205ENST00000431357 CFAP73A6NFT4 308 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 H0YCG3 227 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 SORBS3O60504 671 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 SLCO1A2P46721 670 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 SPRED3Q2MJR0 410 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 MSL1Q68DK7 614 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 PPP1R2P3Q6NXS1 205 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 NSMFQ6X4W1 530 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 SV2AQ7L0J3 742 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 C1orf54Q8WWF1 131 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 POMGNT1Q8WZA1 660 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 ARHGEF2Q92974 986 aaKnown RBP12.05□□□□□ -0.48
USP4-205ENST00000431357 ZKSCAN4Q969J2 545 aaPredicted RBP12.05□□□□□ -0.48
USP4-205ENST00000431357 FAM210AQ96ND0 272 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 TAAR1Q96RJ0 339 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 ELAC2Q9BQ52 826 aaKnown RBP12.05□□□□□ -0.48
USP4-205ENST00000431357 SENP7Q9BQF6 1050 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 TRAIPQ9BWF2 469 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 DCLK3Q9C098 648 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 CCDC113Q9H0I3 377 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 VEZTQ9HBM0 779 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 KIAA1586Q9HCI6 787 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 AAASQ9NRG9 546 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 SLC12A4Q9UP95 1085 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 PCDHB2Q9Y5E7 798 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 MGRN1O60291 552 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 TTC4O95801 387 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 KRT5P13647 590 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 ATF2P15336 505 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 CHRNA5P30532 468 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 SLC8A1P32418 973 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 RTP1P59025 263 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 BRDTQ58F21 947 aaPredicted RBP12.05□□□□□ -0.48
USP4-205ENST00000431357 TRPM8Q7Z2W7 1104 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 CPNE8Q86YQ8 564 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 DYDC1Q8WWB3 177 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 JPH2Q9BR39 696 aaPredicted RBP12.05□□□□□ -0.48
USP4-205ENST00000431357 MOV10L1Q9BXT6 1211 aaKnown RBP12.05□□□□□ -0.48
USP4-205ENST00000431357 GLIS2Q9BZE0 524 aaPredicted RBP12.05□□□□□ -0.48
USP4-205ENST00000431357 FOXP3Q9BZS1 431 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 SLC38A10Q9HBR0 1119 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 C1orf112Q9NSG2 853 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 GINM1Q9NU53 330 aa12.05□□□□□ -0.48
USP4-205ENST00000431357 MAFGO15525 162 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 FDX1P10109 184 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 EIF2AK2P19525 551 aaKnown RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 IVDP26440 423 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 MKRN3Q13064 507 aaKnown RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 PREPLQ4J6C6 727 aaPredicted RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 LIN9Q5TKA1 542 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 TRIM72Q6ZMU5 477 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 MCPH1Q8NEM0 835 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 POP1Q99575 1024 aaKnown RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 CCDC77Q9BR77 488 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 PDCD2LQ9BRP1 358 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 ZNF341Q9BYN7 854 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 TMEM39BQ9GZU3 492 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.04□□□□□ -0.482e-15■■■■■ 372.6
USP4-205ENST00000431357 ANAPC5Q9UJX4 755 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 PCDHA10Q9Y5I2 948 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 TMEM150BA6NC51 233 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 TP73O15350 636 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 PSTPIP1O43586 416 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 C21orf2O43822 256 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 SNX3O60493 162 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 ATP2C2O75185 946 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 PROSCO94903 275 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 CCNE2O96020 404 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 POTEJP0CG39 1038 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 MYCLP12524 364 aaPredicted RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 ITGA8P53708 1063 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 RPS6P62753 249 aaKnown RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 SNX1Q13596 522 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 CCNG2Q16589 344 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 LONRF1Q17RB8 773 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 WDR44Q5JSH3 913 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 UBAP2Q5T6F2 1119 aaKnown RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 WLSQ5T9L3 541 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms