RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 RAB6CQ53S08 254 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 GLRA4Q5JXX5 417 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 KRT39Q6A163 491 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 TXNRD3NBQ6F5E7 133 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 EMC1Q8N766 993 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 FBXL13Q8NEE6 735 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 RAB6CQ9H0N0 254 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 RNPEPQ9H4A4 650 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 MINDY3Q9H8M7 445 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 DBR1Q9UK59 544 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 NUB1Q9Y5A7 615 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 LOXHD1Q8IVV2 1947 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 ATP8B3O60423 1300 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 RBBP6Q7Z6E9 1792 aaKnown RBP8.96□□□□□ -0.97
CD44-208ENST00000428726 H0YHG0 523 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 NDUFAB1O14561 156 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 BANF1O75531 89 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 HSD17B3P37058 310 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 AARSP49588 968 aaKnown RBP eCLIP8.96□□□□□ -0.97
CD44-208ENST00000428726 STAT5BP51692 787 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 GTF2A1P52655 376 aaPredicted RBP8.96□□□□□ -0.97
CD44-208ENST00000428726 MYL6P60660 151 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 GLE1Q53GS7 698 aaKnown RBP8.96□□□□□ -0.97
CD44-208ENST00000428726 EEF1DP3Q658K8 133 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 NIPA1Q7RTP0 329 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 ANKS1BQ7Z6G8 1248 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.96□□□□□ -0.97
CD44-208ENST00000428726 RFFLQ8WZ73 363 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 PCYT2Q99447 389 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.96□□□□□ -0.97
CD44-208ENST00000428726 CAPS2Q9BXY5 557 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 ASCC2Q9H1I8 757 aaPredicted RBP8.96□□□□□ -0.97
CD44-208ENST00000428726 CHST7Q9NS84 486 aa8.96□□□□□ -0.97
CD44-208ENST00000428726 R3HDM2Q9Y2K5 976 aaKnown RBP8.96□□□□□ -0.97
CD44-208ENST00000428726 MYO1FO00160 1098 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 IFNB1P01574 187 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 YBX3P16989 372 aaKnown RBP eCLIP8.96□□□□□ -0.98
CD44-208ENST00000428726 PDE6CP51160 858 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 TGFB2P61812 414 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 TNNC1P63316 161 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 GTF2BQ00403 316 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 KRT76Q01546 638 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 UAP1Q16222 522 aaPredicted RBP8.96□□□□□ -0.98
CD44-208ENST00000428726 KRT71Q3SY84 523 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 C9orf131Q5VYM1 1079 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 SESTD1Q86VW0 696 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 C4orf19Q8IY42 314 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 HELQQ8TDG4 1101 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 ATP6V0A1Q93050 837 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 SPATA33Q96N06 139 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 SELENOSQ9BQE4 189 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 TMEM206Q9H813 350 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 ATP6V0A4Q9HBG4 840 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 CTNNAL1Q9UBT7 734 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 PCSK1NQ9UHG2 260 aa8.96□□□□□ -0.98
CD44-208ENST00000428726 FZD9O00144 591 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 IVLP07476 585 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 CREB1P16220 341 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 LMNB1P20700 586 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 SCP2P22307 547 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 ZNF280AP59817 542 aaPredicted RBP8.95□□□□□ -0.98
CD44-208ENST00000428726 PLCB3Q01970 1234 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 CYP24A1Q07973 514 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 PPP2R5AQ15172 486 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 CDO1Q16878 200 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 KAT2BQ92831 832 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 DDX23Q9BUQ8 820 aaKnown RBP8.95□□□□□ -0.98
CD44-208ENST00000428726 SEMA4AQ9H3S1 761 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 AS3MTQ9HBK9 375 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 NR2E3Q9Y5X4 410 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 FAM169AQ9Y6X4 670 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 KAT6AQ92794 2004 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 RPTORQ8N122 1335 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 EYSQ5T1H1 3165 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 GSTTP1A0A1W2PQM5 241 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 DDX3YO15523 660 aaKnown RBP8.95□□□□□ -0.98
CD44-208ENST00000428726 MYCP01106 439 aaPredicted RBP8.95□□□□□ -0.98
CD44-208ENST00000428726 MAPTP10636 758 aaKnown RBP8.95□□□□□ -0.98
CD44-208ENST00000428726 MAPK4P31152 587 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 GPC5P78333 572 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 DR1Q01658 176 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 CAPSQ13938 189 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 MYBPC2Q14324 1141 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 PPP1R7Q15435 360 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 CCDC142Q17RM4 750 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 BRDTQ58F21 947 aaPredicted RBP8.95□□□□□ -0.98
CD44-208ENST00000428726 ABHD15Q6UXT9 468 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 SLC9A9Q8IVB4 645 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 FMNL3Q8IVF7 1028 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 GPD1LQ8N335 351 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 SAMD3Q8N6K7 520 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 GLIS1Q8NBF1 620 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 REPS2Q8NFH8 660 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 PIK3R5Q8WYR1 880 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 OPTNQ96CV9 577 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 CEP89Q96ST8 783 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 SPATC1LQ9H0A9 340 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 TSPYL1Q9H0U9 437 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 ZWILCHQ9H900 591 aa8.95□□□□□ -0.98
CD44-208ENST00000428726 C1orf112Q9NSG2 853 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms