RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SYCE1LA8MT33 242 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 HSPA6P17066 643 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 PAMP19021 973 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ACOT1Q86TX2 421 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 FAM81BQ96LP2 452 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 RNF208Q9H0X6 261 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 C10orf88Q9H8K7 445 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 SPATA31A3Q5VYP0 1347 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 IQCA1LA6NCM1 817 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 ARIH2O95376 493 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 NR3C1P04150 777 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 GRIN1Q05586 938 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 PTRHD1Q6GMV3 140 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 FAM124AQ86V42 546 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 EHD2Q9NZN4 543 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 SLC30A1Q9Y6M5 507 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 PGK1P00558 417 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 RAG1P15918 1043 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 TNNI3P19429 210 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 PAPOLAP51003 745 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 TBL3Q12788 808 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 MTMR3Q13615 1198 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 APPL2Q8NEU8 664 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 DDI1Q8WTU0 396 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 MCEEQ96PE7 176 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 NFKBIZQ9BYH8 718 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 NMRK2Q9NPI5 230 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 CPA2P48052 419 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 PLCL1Q15111 1095 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 NECTIN1Q15223 517 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 KNOP1Q1ED39 458 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 CCDC124Q96CT7 223 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 MYO3BQ8WXR4 1341 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 ABCC10Q5T3U5 1492 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 MBL2P11226 248 aaPredicted RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 ARSEP51690 589 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 BLOC1S5Q8TDH9 187 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 KATNAL1Q9BW62 490 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 TMEM60Q9H2L4 133 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 MAP4P27816 1152 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 KDSRQ06136 332 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 RESTQ13127 1097 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 DUOXA2Q1HG44 320 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 CENPUQ71F23 418 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 TFAP2DQ7Z6R9 452 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 GPD1LQ8N335 351 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 SNX31Q8N9S9 440 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 COPS5Q92905 334 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 C9orf72Q96LT7 481 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 AGPAT5Q9NUQ2 364 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 THEGQ9P2T0 379 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 PCDHA10Q9Y5I2 948 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 TMEM2Q9UHN6 1383 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 M0QYT0 321 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 BUD23O43709 281 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 FKBP9O95302 570 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 TRIM16O95361 564 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 CPSF4O95639 269 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 CHEK2O96017 543 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 LONRF1Q17RB8 773 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 FKBP9P1Q75LS8 142 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 ADGRL3Q9HAR2 1447 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 LY9Q9HBG7 655 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 CCDC159P0C7I6 412 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 ETF1P62495 437 aaKnown RBP7.76□□□□□ -1.17
VPS13A-202ENST00000357409 GOLGA7BQ2TAP0 167 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 IER5Q5VY09 327 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 C4orf33Q8N1A6 199 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 FMO2Q99518 471 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 PLEKHA5Q9HAU0 1116 aa7.76□□□□□ -1.17
VPS13A-202ENST00000357409 CYTH1Q15438 398 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 PARGQ86W56 976 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 CELF4Q9BZC1 486 aaKnown RBP7.75□□□□□ -1.17
VPS13A-202ENST00000357409 ACTN3Q08043 901 aaPredicted RBP7.75□□□□□ -1.17
VPS13A-202ENST00000357409 NFIAQ12857 509 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 ERAP2Q6P179 960 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 DAGLAQ9Y4D2 1042 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 TBKBP1A7MCY6 615 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 FAM86B1E9PN63 330 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 CKMP06732 381 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 ENO1P06733 434 aaKnown RBP7.75□□□□□ -1.17
VPS13A-202ENST00000357409 PTPN7P35236 360 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 SNAPC2Q13487 334 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 CUL3Q13618 768 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 GTF2H3Q13889 308 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 USP10Q14694 798 aaKnown RBP7.75□□□□□ -1.17
VPS13A-202ENST00000357409 EFHC2Q5JST6 749 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 ALS2CLQ60I27 953 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 BNIPLQ7Z465 357 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 TMEM169Q96HH4 297 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 KIF17Q9P2E2 1029 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 PLAAQ9Y263 795 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 DTNAQ9Y4J8 743 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 RNF103-CHMP3A0A140T963 221 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 IKBKBO14920 756 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 TPST1O60507 370 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 APOA4P06727 396 aa7.75□□□□□ -1.17
VPS13A-202ENST00000357409 EEF1DP29692 281 aaKnown RBP7.75□□□□□ -1.17
VPS13A-202ENST00000357409 AARS2Q5JTZ9 985 aaKnown RBP7.75□□□□□ -1.17
VPS13A-202ENST00000357409 SLFN12LQ6IEE8 588 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms