RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 MT-CO1P00395 513 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 SRGAP2BP0DMP2 458 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 KRT4P19013 534 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 SDC4P31431 198 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 RAP1GDS1P52306 607 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 ACTR2P61160 394 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 KCNMA1Q12791 1236 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 TSGA10IPQ3SY00 556 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 ZNF568Q3ZCX4 644 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 FSCBQ5H9T9 825 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 MIS18BP1Q6P0N0 1132 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 SCN4BQ8IWT1 228 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 CNPY4Q8N129 248 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 FAM193BQ96PV7 902 aaPredicted RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 FSD1LQ9BXM9 530 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 UNKQ9C0B0 810 aaKnown RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 CDHR2Q9BYE9 1310 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 POLRMTO00411 1230 aaKnown RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 KIF1CO43896 1103 aaKnown RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 MAN1A2O60476 641 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 MRPS15P82914 257 aaKnown RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 ORC1Q13415 861 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 EFTUD2Q15029 972 aaKnown RBP eCLIP9.16□□□□□ -0.943e-9■■■■□ 23.3
RTN3-202ENST00000339997 EML3Q32P44 896 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 NBPF20Q3BBV1 942 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 KCNT1Q5JUK3 1230 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 FAM160B1Q5W0V3 765 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 CYGBQ8WWM9 190 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 PRCCQ92733 491 aaPredicted RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 PHF20Q9BVI0 1012 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 BSDC1Q9NW68 430 aaPredicted RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 SMNDC1O75940 238 aaKnown RBP eCLIP9.16□□□□□ -0.94
RTN3-202ENST00000339997 PRELPP51888 382 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 ARHGDIAP52565 204 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 NAALADL2Q58DX5 795 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 PGBD4Q96DM1 585 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 CNBD2Q96M20 576 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 MCEEQ96PE7 176 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 FAM111AQ96PZ2 611 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 TMEM237Q96Q45 408 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 SNX5Q9Y5X3 404 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 LMTK3Q96Q04 1460 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 KDM5AP29375 1690 aaKnown RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 RSPH10B2B2RC85 870 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 RSPH10BP0C881 870 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 COL9A3Q14050 684 aaPredicted RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 KLC3Q6P597 504 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 PRPF39Q86UA1 669 aaKnown RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 TMEM143Q96AN5 459 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 CLMNQ96JQ2 1002 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 CD209Q9NNX6 404 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 STK32BQ9NY57 414 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 RBAKQ9NYW8 714 aaPredicted RBP9.16□□□□□ -0.94
RTN3-202ENST00000339997 HEY2Q9UBP5 337 aa9.16□□□□□ -0.94
RTN3-202ENST00000339997 CCDC22O60826 627 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 MAP4P27816 1152 aaKnown RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 MAGEA4P43358 317 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 ROR1Q01973 937 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 DHX34Q14147 1143 aaKnown RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 TFDP1Q14186 410 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 TFDP2Q14188 446 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 ZBTB46Q86UZ6 589 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 RNF148Q8N7C7 305 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 WNT8AQ9H1J5 351 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 SEMA4AQ9H3S1 761 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 RERGLQ9H628 205 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 ZC3H7BQ9UGR2 993 aaKnown RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 MRPL42Q9Y6G3 142 aaKnown RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 USP6P35125 1406 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 RHOBTB3O94955 611 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 WEE2P0C1S8 567 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 RALAP11233 206 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 GNAT1P11488 350 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 LCP1P13796 627 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 SMARCA1P28370 1054 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 FMO5P49326 533 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 VCPP55072 806 aaKnown RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 NPEPPSP55786 919 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 TNFAIP1Q13829 316 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 RARS2Q5T160 578 aaKnown RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 PLA2G4FQ68DD2 849 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 HEATR4Q86WZ0 1026 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 NDUFAF2Q8N183 169 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 OTULINQ96BN8 352 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 GTPBP10A4D1E9 387 aaKnown RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 KCNQ2O43526 872 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 PSAPP07602 524 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 CCND1P24385 295 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 STX3Q13277 289 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 LBRQ14739 615 aaKnown RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 TRIM65Q6PJ69 517 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 CATSPER4Q7RTX7 472 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 TRAPPC11Q7Z392 1133 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 GIMAP8Q8ND71 665 aaPredicted RBP9.15□□□□□ -0.94
RTN3-202ENST00000339997 RNF139Q8WU17 664 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 SPON2Q9BUD6 331 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 WWP1Q9H0M0 922 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 PSD3Q9NYI0 1048 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 RIMBP3CA6NJZ7 1639 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 RIMBP3BA6NNM3 1639 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms