RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	RCY1	P39531	840 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	YER034W	P40022	185 aa	Known RBP	3.92	□□□□□ -1.78
CAF16	YFL028C	SLM1	P40485	686 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	MDM34	P53083	459 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	CDH1	P53197	566 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	GTR2	P53290	341 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	RDL2	Q08742	149 aa	Known RBP	3.92	□□□□□ -1.78
CAF16	YFL028C	YPL245W	Q12179	454 aa	Known RBP	3.92	□□□□□ -1.78
CAF16	YFL028C	YPR011C	Q12251	326 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	TEL1	P38110	2787 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	COS2	P0CX12	379 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	COS3	P0CX13	379 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	CDC10	P25342	322 aa	Known RBP	3.91	□□□□□ -1.78
CAF16	YFL028C	BUB2	P26448	306 aa	Predicted RBP	3.91	□□□□□ -1.78
CAF16	YFL028C	RPC19	P28000	142 aa	Known RBP	3.91	□□□□□ -1.78
CAF16	YFL028C	CWP1	P28319	239 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	CDC13	P32797	924 aa	Known RBP	3.91	□□□□□ -1.78
CAF16	YFL028C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	3.91	□□□□□ -1.78	not detected
CAF16	YFL028C	KTI12	P34253	313 aa	Known RBP	3.91	□□□□□ -1.78
CAF16	YFL028C	GGC1	P38988	300 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	COS4	P43542	379 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	FMP33	P46998	180 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	YPT32	P51996	222 aa	Known RBP	3.91	□□□□□ -1.78
CAF16	YFL028C	NOP19	P53317	196 aa	Predicted RBP	3.91	□□□□□ -1.78
CAF16	YFL028C	SED5	Q01590	340 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	VHS1	Q03785	461 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	ATC1	Q04005	294 aa		3.91	□□□□□ -1.78
CAF16	YFL028C	TDH1	P00360	332 aa	Known RBP	3.9	□□□□□ -1.79
CAF16	YFL028C	ERD1	P16151	362 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	CMK2	P22517	447 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	CDC50	P25656	391 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	NUP2	P32499	720 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	PTC1	P35182	281 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	AGP3	P43548	558 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	PMT4	P46971	762 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	NRM1	P53718	249 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	CUS2	P53830	285 aa	Predicted RBP	3.9	□□□□□ -1.79
CAF16	YFL028C	SNX41	Q04053	625 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	FAR10	Q06001	478 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	BER1	Q06688	274 aa	Known RBP	3.9	□□□□□ -1.79
CAF16	YFL028C	YOR114W	Q12219	294 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	YOL107W	Q12239	342 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	MHT1	Q12525	324 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	YCL012C	Q8J0M4	134 aa		3.9	□□□□□ -1.79
CAF16	YFL028C	RPL24A	P04449	155 aa	Known RBP	3.89	□□□□□ -1.79
CAF16	YFL028C	SFC1	P33303	322 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	YKL071W	P36086	256 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	CAF4	P36130	643 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	YBR241C	P38142	488 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	BMT2	P38278	337 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	MRX5	P47007	382 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	YNL010W	P53981	241 aa	Known RBP	3.89	□□□□□ -1.79
CAF16	YFL028C	FMN1	Q03778	218 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	ASR1	Q06834	288 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	POM33	Q12164	279 aa		3.89	□□□□□ -1.79
CAF16	YFL028C	UTP23	Q12339	254 aa	Known RBP	3.89	□□□□□ -1.79
CAF16	YFL028C	ZRC1	P20107	442 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	TRX3	P25372	127 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	RPL16B	P26785	198 aa	Known RBP	3.88	□□□□□ -1.79
CAF16	YFL028C	RPT5	P33297	434 aa	Known RBP	3.88	□□□□□ -1.79
CAF16	YFL028C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	3.88	□□□□□ -1.79	not detected
CAF16	YFL028C	TDA11	P38854	504 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	APQ12	P40532	138 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	GAB1	P41733	394 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	BIO3	P50277	480 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	YDR124W	Q04608	324 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	MRX9	Q07349	420 aa	Known RBP	3.88	□□□□□ -1.79
CAF16	YFL028C	YOR376W	Q08900	122 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	RBD2	Q12270	262 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	WTM1	Q12363	437 aa	Known RBP	3.88	□□□□□ -1.79
CAF16	YFL028C	LAG2	Q92325	660 aa		3.88	□□□□□ -1.79
CAF16	YFL028C	SLH1	P53327	1967 aa	Known RBP	3.87	□□□□□ -1.79
CAF16	YFL028C	STE7	P06784	515 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	RPL31A	P0C2H8	113 aa	Known RBP	3.87	□□□□□ -1.79
CAF16	YFL028C	INO2	P26798	304 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	ADE1	P27616	306 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	PDC2	P32896	925 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	YCR087C-A	P37263	153 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	OM14	P38325	134 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	CHL4	P38907	458 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	PET100	P38958	111 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	TMA22	P47089	198 aa	Predicted RBP	3.87	□□□□□ -1.79
CAF16	YFL028C	YNL140C	P53910	189 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	MET31	Q03081	177 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	YDR115W	Q04598	105 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	GPN3	Q06543	272 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	BSC6	Q08280	497 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	RRP40	Q08285	240 aa	Known RBP	3.87	□□□□□ -1.79
CAF16	YFL028C	JLP1	Q12358	412 aa		3.87	□□□□□ -1.79
CAF16	YFL028C	RPL21B	Q12672	160 aa	Known RBP	3.87	□□□□□ -1.79
CAF16	YFL028C	TDH3	P00359	332 aa	Known RBP RIP-Chip data	3.86	□□□□□ -1.79	not detected
CAF16	YFL028C	ATP6	P00854	259 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	PRB1	P09232	635 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	DEP1	P31385	405 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	YKL063C	P35725	167 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	YPC1	P38298	316 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	PET8	P38921	284 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	SOP4	P39543	234 aa	Predicted RBP	3.86	□□□□□ -1.79
CAF16	YFL028C	FRT2	P39734	528 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	STB1	P42845	420 aa		3.86	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 155.4 ms