RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	API2	Q04413	109 aa		12.23	□□□□□ -0.45
DEP1	YAL013W	RSC58	Q07979	502 aa		12.23	□□□□□ -0.45
DEP1	YAL013W	HEM4	P06174	275 aa		12.22	□□□□□ -0.45
DEP1	YAL013W	RPL30	P14120	105 aa	Known RBP	12.22	□□□□□ -0.45
DEP1	YAL013W	ATF1	P40353	525 aa		12.22	□□□□□ -0.45
DEP1	YAL013W	IDP2	P41939	412 aa		12.22	□□□□□ -0.45
DEP1	YAL013W	TY1A-DR2	Q03964	440 aa	Known RBP	12.22	□□□□□ -0.45
DEP1	YAL013W	FOL3	Q12676	427 aa	Predicted RBP	12.22	□□□□□ -0.45
DEP1	YAL013W	FSH3	Q99369	266 aa		12.22	□□□□□ -0.45
DEP1	YAL013W	DSF1	P0CX08	502 aa		12.21	□□□□□ -0.45
DEP1	YAL013W	YNR073C	P0CX09	502 aa		12.21	□□□□□ -0.45
DEP1	YAL013W	URA6	P15700	204 aa		12.21	□□□□□ -0.45
DEP1	YAL013W	APL3	P38065	1025 aa		12.21	□□□□□ -0.45
DEP1	YAL013W	ACS2	P52910	683 aa	Known RBP	12.21	□□□□□ -0.45
DEP1	YAL013W	NSA1	P53136	463 aa	Predicted RBP	12.21	□□□□□ -0.45
DEP1	YAL013W	HNT1	Q04344	158 aa	Known RBP	12.21	□□□□□ -0.45
DEP1	YAL013W	RAD52	P06778	471 aa	Known RBP	12.2	□□□□□ -0.46
DEP1	YAL013W	MRPL36	P36531	177 aa		12.2	□□□□□ -0.46
DEP1	YAL013W	STS1	P38637	319 aa		12.2	□□□□□ -0.46
DEP1	YAL013W	YJL016W	P47072	561 aa		12.2	□□□□□ -0.46
DEP1	YAL013W	GPG1	P53130	126 aa		12.2	□□□□□ -0.46
DEP1	YAL013W	YLR031W	Q07978	186 aa		12.2	□□□□□ -0.46
DEP1	YAL013W	USB1	Q12208	290 aa	Known RBP	12.2	□□□□□ -0.46
DEP1	YAL013W	RNA14	P25298	677 aa	Known RBP	12.19	□□□□□ -0.46
DEP1	YAL013W	MRPL27	P36526	146 aa	Predicted RBP	12.19	□□□□□ -0.46
DEP1	YAL013W	SEN34	P39707	275 aa		12.19	□□□□□ -0.46
DEP1	YAL013W	PTI1	P39927	425 aa	Predicted RBP	12.19	□□□□□ -0.46
DEP1	YAL013W	AVT4	P50944	713 aa		12.19	□□□□□ -0.46
DEP1	YAL013W	TYW3	P53177	273 aa		12.19	□□□□□ -0.46
DEP1	YAL013W	SPR28	Q04921	423 aa		12.19	□□□□□ -0.46
DEP1	YAL013W	MRX9	Q07349	420 aa	Known RBP	12.19	□□□□□ -0.46
DEP1	YAL013W	YLR125W	Q12138	136 aa		12.19	□□□□□ -0.46
DEP1	YAL013W	TDH2	P00358	332 aa	Known RBP	12.18	□□□□□ -0.46
DEP1	YAL013W	IPP1	P00817	287 aa	Known RBP	12.18	□□□□□ -0.46
DEP1	YAL013W	VMA5	P31412	392 aa	Known RBP	12.18	□□□□□ -0.46
DEP1	YAL013W	YIP5	P53108	310 aa		12.18	□□□□□ -0.46
DEP1	YAL013W	YLR283W	Q05867	314 aa		12.18	□□□□□ -0.46
DEP1	YAL013W	CDC28	P00546	298 aa	Known RBP	12.17	□□□□□ -0.46
DEP1	YAL013W	STF2	P16965	84 aa		12.17	□□□□□ -0.46
DEP1	YAL013W	GRX2	P17695	143 aa	Known RBP	12.17	□□□□□ -0.46
DEP1	YAL013W	REC114	P32841	428 aa		12.17	□□□□□ -0.46
DEP1	YAL013W	MOB2	P43563	287 aa		12.17	□□□□□ -0.46
DEP1	YAL013W	ALG12	P53730	551 aa		12.17	□□□□□ -0.46
DEP1	YAL013W	HAS1	Q03532	505 aa	Known RBP	12.17	□□□□□ -0.46
DEP1	YAL013W	FIT3	Q08907	204 aa		12.17	□□□□□ -0.46
DEP1	YAL013W	PRP8	P33334	2413 aa	Known RBP	12.16	□□□□□ -0.46
DEP1	YAL013W	AAC1	P04710	309 aa		12.16	□□□□□ -0.46
DEP1	YAL013W	GCD1	P09032	578 aa	Predicted RBP	12.16	□□□□□ -0.46
DEP1	YAL013W	HNM1	P19807	563 aa		12.16	□□□□□ -0.46
DEP1	YAL013W	DEG1	P31115	442 aa	Known RBP	12.16	□□□□□ -0.46
DEP1	YAL013W	AGA2	P32781	87 aa		12.16	□□□□□ -0.46
DEP1	YAL013W	UTP30	P36144	274 aa	Known RBP	12.16	□□□□□ -0.46
DEP1	YAL013W	YHL037C	P38733	133 aa		12.16	□□□□□ -0.46
DEP1	YAL013W	GPI16	P38875	610 aa		12.16	□□□□□ -0.46
DEP1	YAL013W	YND1	P40009	630 aa		12.16	□□□□□ -0.46
DEP1	YAL013W	OST1	P41543	476 aa	Known RBP	12.16	□□□□□ -0.46
DEP1	YAL013W	LSM1	P47017	172 aa	Known RBP	12.16	□□□□□ -0.46
DEP1	YAL013W	RFU1	Q08003	200 aa		12.16	□□□□□ -0.46
DEP1	YAL013W	RDI1	Q12434	202 aa		12.16	□□□□□ -0.46
DEP1	YAL013W	SAR1	P20606	190 aa	Known RBP	12.15	□□□□□ -0.46
DEP1	YAL013W	DIT1	P21623	536 aa		12.15	□□□□□ -0.46
DEP1	YAL013W	RFA3	P26755	122 aa	Known RBP	12.15	□□□□□ -0.46
DEP1	YAL013W	FMT1	P32785	401 aa		12.15	□□□□□ -0.46
DEP1	YAL013W	VAM7	P32912	316 aa		12.15	□□□□□ -0.46
DEP1	YAL013W	SIP18	P50263	79 aa		12.15	□□□□□ -0.46
DEP1	YAL013W	URA3	P03962	267 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	RFA1	P22336	621 aa	Known RBP	12.14	□□□□□ -0.47
DEP1	YAL013W	MAK32	P23060	363 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	RPI1	P23250	407 aa	Known RBP	12.14	□□□□□ -0.47
DEP1	YAL013W	IFM1	P25038	676 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	CPR4	P25334	318 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	GWT1	P47026	490 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	RSM27	P53305	110 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	NGL2	Q03264	515 aa	Known RBP	12.14	□□□□□ -0.47
DEP1	YAL013W	CRR1	Q05790	422 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	COX17	Q12287	69 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	HUT1	Q12520	339 aa		12.14	□□□□□ -0.47
DEP1	YAL013W	RPS31	P05759	152 aa	Known RBP	12.13	□□□□□ -0.47
DEP1	YAL013W	CDC34	P14682	295 aa		12.13	□□□□□ -0.47
DEP1	YAL013W	ARO3	P14843	370 aa	Known RBP	12.13	□□□□□ -0.47
DEP1	YAL013W	SAG1	P20840	650 aa		12.13	□□□□□ -0.47
DEP1	YAL013W	PEX4	P29340	183 aa		12.13	□□□□□ -0.47
DEP1	YAL013W	MCH2	P36032	473 aa		12.13	□□□□□ -0.47
DEP1	YAL013W	ARC40	P38328	384 aa	Known RBP	12.13	□□□□□ -0.47
DEP1	YAL013W	SKP1	P52286	194 aa		12.13	□□□□□ -0.47
DEP1	YAL013W	DLT1	Q04216	342 aa		12.13	□□□□□ -0.47
DEP1	YAL013W	VBA1	Q04301	562 aa		12.13	□□□□□ -0.47
DEP1	YAL013W	RRS1	Q08746	203 aa	Known RBP	12.13	□□□□□ -0.47
DEP1	YAL013W	PRS5	Q12265	496 aa	Known RBP	12.13	□□□□□ -0.47
DEP1	YAL013W	ARG80	P07249	177 aa		12.12	□□□□□ -0.47
DEP1	YAL013W	YKL063C	P35725	167 aa		12.12	□□□□□ -0.47
DEP1	YAL013W	GTF1	P53260	183 aa	Predicted RBP	12.12	□□□□□ -0.47
DEP1	YAL013W	SMX3	P54999	86 aa	Predicted RBP	12.12	□□□□□ -0.47
DEP1	YAL013W	SYM1	Q06563	197 aa		12.12	□□□□□ -0.47
DEP1	YAL013W	NCE102	Q12207	173 aa	RIP-Chip data	12.12	□□□□□ -0.47	not detected
DEP1	YAL013W	PUT1	P09368	476 aa		12.11	□□□□□ -0.47
DEP1	YAL013W	YCR016W	P25617	290 aa	Known RBP	12.11	□□□□□ -0.47
DEP1	YAL013W	FLX1	P40464	311 aa		12.11	□□□□□ -0.47
DEP1	YAL013W	MID1	P41821	548 aa		12.11	□□□□□ -0.47
DEP1	YAL013W	YFL051C	P43552	160 aa		12.11	□□□□□ -0.47

Retrieved 100 of 5,963 RNA–protein pairs in 49.3 ms