RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 DZANK1Q9NVP4 752 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 STK17AQ9UEE5 414 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 DNM1Q05193 864 aaKnown RBP21.08■□□□□ 0.97
CLN3-260ENST00000637578 DHX8Q14562 1220 aaKnown RBP21.08■□□□□ 0.97
CLN3-260ENST00000637578 KRI1Q8N9T8 703 aaKnown RBP21.08■□□□□ 0.97
CLN3-260ENST00000637578 LINC00301Q8NCQ3 95 aa21.08■□□□□ 0.97
CLN3-260ENST00000637578 RASSF8Q8NHQ8 419 aa21.08■□□□□ 0.97
CLN3-260ENST00000637578 CHAMP1Q96JM3 812 aa21.08■□□□□ 0.97
CLN3-260ENST00000637578 ZBTB45Q96K62 511 aaPredicted RBP21.08■□□□□ 0.97
CLN3-260ENST00000637578 FIZ1Q96SL8 496 aa21.08■□□□□ 0.97
CLN3-260ENST00000637578 CCDC94Q9BW85 323 aaPredicted RBP21.08■□□□□ 0.97
CLN3-260ENST00000637578 PARVGQ9HBI0 331 aa21.08■□□□□ 0.97
CLN3-260ENST00000637578 CCDC39Q9UFE4 941 aa21.08■□□□□ 0.97
CLN3-260ENST00000637578 SMIM28A0A1B0GU29 152 aa21.07■□□□□ 0.96
CLN3-260ENST00000637578 CASTOR2A6NHX0 329 aa21.07■□□□□ 0.96
CLN3-260ENST00000637578 C1RP00736 705 aa21.07■□□□□ 0.96
CLN3-260ENST00000637578 KLRC2P26717 231 aa21.07■□□□□ 0.96
CLN3-260ENST00000637578 USP41Q3LFD5 358 aa21.07■□□□□ 0.96
CLN3-260ENST00000637578 ZBTB33Q86T24 672 aa21.07■□□□□ 0.96
CLN3-260ENST00000637578 TCHPQ9BT92 498 aa21.07■□□□□ 0.96
CLN3-260ENST00000637578 TOPORSQ9NS56 1045 aaPredicted RBP21.07■□□□□ 0.96
CLN3-260ENST00000637578 C2CD2LO14523 706 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 TEX28O15482 410 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 MEFVO15553 781 aaPredicted RBP21.06■□□□□ 0.96
CLN3-260ENST00000637578 TADA2AO75478 443 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 KIF4AO95239 1232 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 YARSP54577 528 aaKnown RBP21.06■□□□□ 0.96
CLN3-260ENST00000637578 MCL1Q07820 350 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 MYCT1Q8N699 235 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 ACAP3Q96P50 834 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 APOL5Q9BWW9 433 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 TBX20Q9UMR3 447 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 ATP6V1DQ9Y5K8 247 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 MYH11P35749 1972 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 TMEM189-UBE2V1I3L0A0 370 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 TRAK2O60296 914 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 SF3B1O75533 1304 aaKnown RBP eCLIP21.06■□□□□ 0.963e-9■■■■■ 164.7
CLN3-260ENST00000637578 FAM13AO94988 1023 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 PIGRP01833 764 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 KCNE1P15382 129 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 GLRA4Q5JXX5 417 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 ATL3Q6DD88 541 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 SNX27Q96L92 541 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 FBXL18Q96ME1 805 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 HAPLN2Q9GZV7 340 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLN3-260ENST00000637578 CNTN3Q9P232 1028 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 FNIP2Q9P278 1114 aa21.06■□□□□ 0.96
CLN3-260ENST00000637578 ADH1AP07327 375 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 ALADP13716 330 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 TXLNAP40222 546 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 OSTNP61366 133 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 NOLC1Q14978 699 aaKnown RBP eCLIP21.05■□□□□ 0.96
CLN3-260ENST00000637578 STK38Q15208 465 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 UPP1Q16831 310 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 RRAGBQ5VZM2 374 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 KIAA1841Q6NSI8 718 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 CES5AQ6NT32 575 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 CD300LGQ6UXG3 332 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 B3GALT6Q96L58 329 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 UROC1Q96N76 676 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 ZMAT2Q96NC0 199 aaKnown RBP21.05■□□□□ 0.96
CLN3-260ENST00000637578 NECTIN4Q96NY8 510 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 ST6GALNAC4Q9H4F1 302 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 C11orf16Q9NQ32 467 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 CHMP5Q9NZZ3 219 aa21.05■□□□□ 0.96
CLN3-260ENST00000637578 CLDN3O15551 220 aa21.04■□□□□ 0.96
CLN3-260ENST00000637578 PPP6R2O75170 966 aa21.04■□□□□ 0.96
CLN3-260ENST00000637578 YEATS4O95619 227 aa21.04■□□□□ 0.96
CLN3-260ENST00000637578 KRT18P05783 430 aaKnown RBP21.04■□□□□ 0.96
CLN3-260ENST00000637578 GTF2BQ00403 316 aa21.04■□□□□ 0.96
CLN3-260ENST00000637578 SOX4Q06945 474 aaPredicted RBP21.04■□□□□ 0.96
CLN3-260ENST00000637578 DCLRE1AQ6PJP8 1040 aa21.04■□□□□ 0.96
CLN3-260ENST00000637578 RNF135Q8IUD6 432 aa21.04■□□□□ 0.96
CLN3-260ENST00000637578 C12orf76Q8N812 135 aaPredicted RBP21.04■□□□□ 0.96
CLN3-260ENST00000637578 CDH22Q9UJ99 828 aa21.04■□□□□ 0.96
CLN3-260ENST00000637578 A0A087X0B3 334 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 SPTLC2O15270 562 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 DCXO43602 365 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 GPR37L1O60883 481 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 TBCAO75347 108 aaKnown RBP21.03■□□□□ 0.96
CLN3-260ENST00000637578 PAPLNO95428 1278 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 IGFBP6P24592 240 aaPredicted RBP21.03■□□□□ 0.96
CLN3-260ENST00000637578 ABCD1P33897 745 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 ELAVL2Q12926 359 aaKnown RBP21.03■□□□□ 0.96
CLN3-260ENST00000637578 SLC10A6Q3KNW5 377 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 HERC4Q5GLZ8 1057 aaPredicted RBP21.03■□□□□ 0.96
CLN3-260ENST00000637578 RTP2Q5QGT7 225 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 KANK3Q6NY19 840 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 CCDC73Q6ZRK6 1079 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 HASPINQ8TF76 798 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 DNAJC19Q96DA6 116 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 SFXN1Q9H9B4 322 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 SLC38A7Q9NVC3 462 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 ANKFY1Q9P2R3 1169 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 CFAP45Q9UL16 551 aa21.03■□□□□ 0.96
CLN3-260ENST00000637578 MYH15Q9Y2K3 1946 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 MYMKA6NI61 221 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 K7ENM7 598 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 MTHFRP42898 656 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms