RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 PCDHB2Q9Y5E7 798 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 CITO14578 2027 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 ITIH6Q6UXX5 1313 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 TET1Q8NFU7 2136 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 A0A0U1RQF3 1178 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 TRIM43BA6NCK2 446 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 TIMP1P01033 207 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 SKIP12755 728 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 AP3M2P53677 418 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 CCL23P55773 120 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 OSTNP61366 133 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 UBXN1Q04323 297 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 ALKAL1Q6UXT8 129 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 NT5DC4Q86YG4 428 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 DBF4BQ8NFT6 615 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 LINC01599Q8WXQ3 324 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 SEPT8Q92599 483 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 ANP32BQ92688 251 aaKnown RBP17.5■□□□□ 0.39
SS18-211ENST00000578954 TRIM43Q96BQ3 446 aaPredicted RBP17.5■□□□□ 0.39
SS18-211ENST00000578954 CCDC127Q96BQ5 260 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 VWCEQ96DN2 955 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 SCLYQ96I15 445 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 FNBP1Q96RU3 617 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 ADAM2Q99965 735 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 TMEM117Q9H0C3 514 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 TSPYL2Q9H2G4 693 aaPredicted RBP17.5■□□□□ 0.39
SS18-211ENST00000578954 TMEM8AQ9HCN3 771 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 C1orf112Q9NSG2 853 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 SNTG2Q9NY99 539 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 SIK3Q9Y2K2 1263 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 COQ4Q9Y3A0 265 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 SCN5AQ14524 2016 aa17.5■□□□□ 0.39
SS18-211ENST00000578954 PTPRJQ12913 1337 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 C9IYK1 514 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 RECQL4O94761 1208 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 DLATP10515 647 aaKnown RBP17.49■□□□□ 0.39
SS18-211ENST00000578954 ATF7P17544 494 aaPredicted RBP17.49■□□□□ 0.39
SS18-211ENST00000578954 FAM189BP81408 668 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 CBWD6Q4V339 395 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 CBWD3Q5JTY5 395 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 CBWD5Q5RIA9 395 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 ZNF598Q86UK7 904 aaKnown RBP17.49■□□□□ 0.39
SS18-211ENST00000578954 RTN4RL1Q86UN2 441 aaPredicted RBP17.49■□□□□ 0.39
SS18-211ENST00000578954 HACE1Q8IYU2 909 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 ZNF516Q92618 1163 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 TSPAN18Q96SJ8 248 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 TOPORSQ9NS56 1045 aaPredicted RBP17.49■□□□□ 0.39
SS18-211ENST00000578954 CNTN3Q9P232 1028 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 DERAQ9Y315 318 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 HES2Q9Y543 173 aa17.49■□□□□ 0.39
SS18-211ENST00000578954 LACTBL1A8MY62 500 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 RBAK-RBAKDNI3L0D1 243 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 PES1O00541 588 aaKnown RBP17.48■□□□□ 0.39
SS18-211ENST00000578954 C4BPAP04003 597 aaKnown RBP17.48■□□□□ 0.39
SS18-211ENST00000578954 ITGB8P26012 769 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 MXI1P50539 228 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 YARSP54577 528 aaKnown RBP17.48■□□□□ 0.39
SS18-211ENST00000578954 MYL7Q01449 175 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 KCNMA1Q12791 1236 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 ZACNQ401N2 412 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 EPC2Q52LR7 807 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 KRT39Q6A163 491 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 SLC24A5Q71RS6 500 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 SV2AQ7L0J3 742 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 ECHDC2Q86YB7 292 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 EFCAB13Q8IY85 973 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 POP1Q99575 1024 aaKnown RBP17.48■□□□□ 0.39
SS18-211ENST00000578954 RNF39Q9H2S5 420 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 C2CD2Q9Y426 696 aa17.48■□□□□ 0.39
SS18-211ENST00000578954 INPPL1O15357 1258 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 KCNE1P15382 129 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 TNNI1P19237 187 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 GCLMP48507 274 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 SYCP1Q15431 976 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 TCTN1Q2MV58 587 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 SPECC1LQ69YQ0 1117 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 MFSD5Q6N075 450 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 DPY19L2P1Q6NXN4 242 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 GBP6Q6ZN66 633 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 OR5B17Q8NGF7 314 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 LMO3Q8TAP4 145 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 PPP1R9BQ96SB3 815 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 GIT1Q9Y2X7 761 aa17.47■□□□□ 0.39
SS18-211ENST00000578954 PDCD11Q14690 1871 aaKnown RBP17.47■□□□□ 0.39
SS18-211ENST00000578954 EOMESO95936 686 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 PFKMP08237 780 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 NFICP08651 508 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 ITGA4P13612 1032 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 RAG1P15918 1043 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 AKAP5P24588 427 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 CCDC173Q0VFZ6 552 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 TBX2Q13207 712 aaPredicted RBP17.46■□□□□ 0.39
SS18-211ENST00000578954 ZBTB6Q15916 424 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 EXOC3L4Q17RC7 722 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 DUOXA2Q1HG44 320 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 FIGNQ5HY92 759 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 JADE1Q6IE81 842 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 CNKSR3Q6P9H4 555 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 AGMOQ6ZNB7 445 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 PGBD4Q96DM1 585 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms