RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 SETSIPP0DME0 302 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 CYP2C19P33261 490 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 GTF2H3Q13889 308 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 GRM3Q14832 879 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 HSF5Q4G112 596 aaPredicted RBP7.03□□□□□ -1.28
VPS53-212ENST00000572259 LRRC24Q50LG9 513 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 TRIM61Q5EBN2 209 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 MBLAC2Q68D91 279 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 CFAP161Q6P656 301 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 MAATS1Q7Z4T9 603 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 SLCO6A1Q86UG4 719 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 RCBTB1Q8NDN9 531 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 SLC7A14Q8TBB6 771 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 MYLIPQ8WY64 445 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 LPIN2Q92539 896 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 DCPSQ96C86 337 aaKnown RBP7.03□□□□□ -1.28
VPS53-212ENST00000572259 TTC1Q99614 292 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 MENTQ9BUN1 341 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 PUS3Q9BZE2 481 aaKnown RBP7.03□□□□□ -1.28
VPS53-212ENST00000572259 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS53-212ENST00000572259 DDX19BQ9UMR2 479 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 APOBEC2Q9Y235 224 aaKnown RBP7.03□□□□□ -1.28
VPS53-212ENST00000572259 FAM50BQ9Y247 325 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 COL4A5P29400 1685 aa7.03□□□□□ -1.28
VPS53-212ENST00000572259 FRMPD2Q68DX3 1309 aaPredicted RBP7.02□□□□□ -1.28
VPS53-212ENST00000572259 TRPM7Q96QT4 1865 aa7.02□□□□□ -1.28
VPS53-212ENST00000572259 SNUPNO95149 360 aaKnown RBP7.02□□□□□ -1.29
VPS53-212ENST00000572259 IL1R1P14778 569 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 AK2P54819 239 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 FKBP1AP62942 108 aaKnown RBP7.02□□□□□ -1.29
VPS53-212ENST00000572259 GUCY1A3Q02108 690 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 MTX1Q13505 466 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 PTPN21Q16825 1174 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 TMEM240Q5SV17 173 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 MZT2BQ6NZ67 158 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 FAM186BQ8IYM0 893 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 ABI1Q8IZP0 508 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 LILRA2Q8N149 483 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 NUP43Q8NFH3 380 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS53-212ENST00000572259 TBC1D22AQ8WUA7 517 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 USP7Q93009 1102 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 PGBD4Q96DM1 585 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 ALG1Q9BT22 464 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 SLC13A1Q9BZW2 595 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 SIL1Q9H173 461 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 RETREG1Q9H6L5 497 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS53-212ENST00000572259 GULP1Q9UBP9 304 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 GPR160Q9UJ42 338 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 CTNND2Q9UQB3 1225 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 SLC45A1Q9Y2W3 748 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 GIT1Q9Y2X7 761 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 PCDHA9Q9Y5H5 950 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 COL4A1P02462 1669 aa7.02□□□□□ -1.29
VPS53-212ENST00000572259 CEP350Q5VT06 3117 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.01□□□□□ -1.29
VPS53-212ENST00000572259 F5H423 210 aaPredicted RBP7.01□□□□□ -1.29
VPS53-212ENST00000572259 ZEB2O60315 1214 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 MSCO60682 206 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 HMMRO75330 724 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 CRTAMO95727 393 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 HPXP02790 462 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 PF4V1P10720 104 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 PRKCAP17252 672 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 AFMP43652 599 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 GYG1P46976 350 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 RFX5P48382 616 aaPredicted RBP7.01□□□□□ -1.29
VPS53-212ENST00000572259 ERVFC1P60507 584 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 ATP8B2P98198 1209 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 NUCB1Q02818 461 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 ADCY1Q08828 1119 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 LSAMPQ13449 338 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 NR0B2Q15466 257 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 ATP2B3Q16720 1220 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 KIZQ2M2Z5 673 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 ARHGAP29Q52LW3 1261 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 TSHZ3Q63HK5 1081 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 XRRA1Q6P2D8 792 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 LBX2Q6XYB7 198 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 RSRC2Q7L4I2 434 aaKnown RBP7.01□□□□□ -1.29
VPS53-212ENST00000572259 EPM2AIP1Q7L775 607 aaPredicted RBP7.01□□□□□ -1.29
VPS53-212ENST00000572259 BRAPQ7Z569 592 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 NBPF11Q86T75 865 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 SRLQ86TD4 932 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 ZSCAN30Q86W11 494 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 TDRD7Q8NHU6 1098 aaKnown RBP7.01□□□□□ -1.29
VPS53-212ENST00000572259 KLHDC4Q8TBB5 520 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 COG1Q8WTW3 980 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 FAM84BQ96KN1 310 aaPredicted RBP7.01□□□□□ -1.29
VPS53-212ENST00000572259 YTHDC1Q96MU7 727 aaKnown RBP7.01□□□□□ -1.29
VPS53-212ENST00000572259 AIFM3Q96NN9 605 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 TSPAN18Q96SJ8 248 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 IFT22Q9H7X7 185 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 MYOZ2Q9NPC6 264 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 RIC8AQ9NPQ8 531 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 RASSF1Q9NS23 344 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 SAGE1Q9NXZ1 904 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 IMPACTQ9P2X3 320 aa7.01□□□□□ -1.29
VPS53-212ENST00000572259 PCDHA8Q9Y5H6 950 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms