RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 KIF22Q14807 665 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 C2CD6Q53TS8 623 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 LVRNQ6Q4G3 990 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ZNF662Q6ZS27 426 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 FBXO33Q7Z6M2 555 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ATL2Q8NHH9 583 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 AGAP11Q8TF27 550 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 FAM20AQ96MK3 541 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 TTC25Q96NG3 672 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 SLC13A1Q9BZW2 595 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ROPN1BQ9BZX4 212 aaPredicted RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 ROPN1Q9HAT0 212 aaPredicted RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 LZTS1Q9Y250 596 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.54□□□□□ -1.2
USP3-210ENST00000559192 RAP1GDS1P52306 607 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 PTENP60484 403 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 TRIML2Q8N7C3 387 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ELMO3Q96BJ8 720 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 CYP4F11Q9HBI6 524 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 FOXN3O00409 490 aaPredicted RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 TLR3O15455 904 aaKnown RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 S100BP04271 92 aaPredicted RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 TAL1P17542 331 aaPredicted RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 DRD4P21917 467 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 SLC13A5Q86YT5 568 aaPredicted RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 RHPN2Q8IUC4 686 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.54□□□□□ -1.2
USP3-210ENST00000559192 TNFRSF25Q93038 417 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 FAF2Q96CS3 445 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 CARD9Q9H257 536 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 NDE1Q9NXR1 346 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 PNMA3Q9UL41 463 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 NEU2Q9Y3R4 380 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 PCDHGC5Q9Y5F6 944 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ZNF335Q9H4Z2 1342 aaPredicted RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 ADAMTS3O15072 1205 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 CFLARO15519 480 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 CYTH3O43739 400 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 DKC1O60832 514 aaKnown RBP eCLIP7.54□□□□□ -1.2
USP3-210ENST00000559192 CDH16O75309 829 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 KRT75O95678 551 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 GH2P01242 217 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 PSMA2P25787 234 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ANXA13P27216 316 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 TMED10P49755 219 aaKnown RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 PSMC6P62333 389 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 AP2B1P63010 937 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 PDE1BQ01064 536 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 KRT80Q6KB66 452 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 NT5DC3Q86UY8 548 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 PDIK1LQ8N165 341 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ACSF2Q96CM8 615 aaPredicted RBP7.54□□□□□ -1.2
USP3-210ENST00000559192 SCYL1Q96KG9 808 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 SERPINB12Q96P63 405 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 HSPBP1Q9NZL4 362 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 AIPL1Q9NZN9 384 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ZFATQ9P243 1243 aa7.54□□□□□ -1.2
USP3-210ENST00000559192 ATRNO75882 1429 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 KCNQ2O43526 872 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 DNAJC6O75061 913 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 WBP4O75554 376 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 STK10O94804 968 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 MARK3P27448 753 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 MAGEA4P43358 317 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 NOP14P78316 857 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 GIT2Q14161 759 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 RCN1Q15293 331 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 CDO1Q16878 200 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 TAF1BQ53T94 588 aaPredicted RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 CLEC4GQ6UXB4 293 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 CYFIP1Q7L576 1253 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 LRP10Q7Z4F1 713 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 CRLF3Q8IUI8 442 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 MREGQ8N565 214 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 SPDYE1Q8NFV5 336 aaPredicted RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 TEKT4Q8WW24 435 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 ARHGEF26Q96DR7 871 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 MAGEB18Q96M61 343 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 CCDC138Q96M89 665 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 POP1Q99575 1024 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 NEUROG2Q9H2A3 272 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 SMYD2Q9NRG4 433 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 MARCOQ9UEW3 520 aaPredicted RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 TTLL3Q9Y4R7 772 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 SYNJ2BP-COX16A0A087WUM0 186 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 A8MUI8 341 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 ZBED4O75132 1171 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 MRPS15P82914 257 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 CUL3Q13618 768 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 ATG16L1Q676U5 607 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 KCNV1Q6PIU1 500 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 C3orf67Q6ZVT6 689 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 RHOT1Q8IXI2 618 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 NAF1Q96HR8 494 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 DDX28Q9NUL7 540 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 COX16Q9P0S2 106 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 LTN1O94822 1766 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 GNAT1P11488 350 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 EIF2AK2P19525 551 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 SERPINB4P48594 390 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms