RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 ZDHHC14Q8IZN3 488 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 PLCD3Q8N3E9 789 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 PIK3R5Q8WYR1 880 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 DDX27Q96GQ7 796 aaKnown RBP12.98□□□□□ -0.33
VRK1-204ENST00000555351 RPGRIP1Q96KN7 1286 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 TARS2Q9BW92 718 aaKnown RBP12.98□□□□□ -0.33
VRK1-204ENST00000555351 POMKQ9H5K3 350 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 BLOC1S4Q9NUP1 217 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 MUTYHQ9UIF7 546 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 GDAQ9Y2T3 454 aa12.98□□□□□ -0.33
VRK1-204ENST00000555351 SRPRBQ9Y5M8 271 aaKnown RBP12.98□□□□□ -0.33
VRK1-204ENST00000555351 DENND4AQ7Z401 1863 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 SMIM28A0A1B0GU29 152 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 F8W810 466 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 TRAPPC3O43617 180 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 KCNE1P15382 129 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 MCL1Q07820 350 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 LILRA6Q6PI73 481 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 DCLRE1AQ6PJP8 1040 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.97□□□□□ -0.33
VRK1-204ENST00000555351 RTL10Q7L3V2 364 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 RAD54LQ92698 747 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 ACAP3Q96P50 834 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 TSPAN18Q96SJ8 248 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 TCHPQ9BT92 498 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 TTPALQ9BTX7 342 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 KCNH6Q9H252 994 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 PARVGQ9HBI0 331 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 CNTN3Q9P232 1028 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 STK17AQ9UEE5 414 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 CCDC39Q9UFE4 941 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 USP20Q9Y2K6 914 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 HCN4Q9Y3Q4 1203 aa12.97□□□□□ -0.33
VRK1-204ENST00000555351 CASTOR2A6NHX0 329 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 SFI1A8K8P3 1242 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 C2CD2LO14523 706 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 CLDN3O15551 220 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 KIF4AO95239 1232 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 PIGRP01833 764 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 PLCG1P19174 1290 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 RPL9P32969 192 aaKnown RBP12.96□□□□□ -0.33
VRK1-204ENST00000555351 DDIT3P35638 169 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 ZXDAP98168 799 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 NOLC1Q14978 699 aaKnown RBP eCLIP12.96□□□□□ -0.33
VRK1-204ENST00000555351 PTPN21Q16825 1174 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 UPP1Q16831 310 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 HAUS6Q7Z4H7 955 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 GPBP1Q86WP2 473 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 RIN2Q8WYP3 895 aaPredicted RBP12.96□□□□□ -0.33
VRK1-204ENST00000555351 LARP4BQ92615 738 aaKnown RBP12.96□□□□□ -0.33
VRK1-204ENST00000555351 SNX27Q96L92 541 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 PLIN2Q99541 437 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 REEP2Q9BRK0 252 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 PAAF1Q9BRP4 392 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 APOL5Q9BWW9 433 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 ST6GALNAC4Q9H4F1 302 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 PLEKHA5Q9HAU0 1116 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 MAN1C1Q9NR34 630 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 ZDHHC7Q9NXF8 308 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 FBXO2Q9UK22 296 aaPredicted RBP12.96□□□□□ -0.33
VRK1-204ENST00000555351 MTMR6Q9Y217 621 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 CLIC4Q9Y696 253 aa12.96□□□□□ -0.33
VRK1-204ENST00000555351 C5orf42Q9H799 3197 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 PLXNA3P51805 1871 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 SPDYE4A6NLX3 237 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 STX6O43752 255 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 FAM13AO94988 1023 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 FGFR3P22607 806 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 TXLNAP40222 546 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 GRIN1Q05586 938 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 RAD51AP2Q09MP3 1159 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 SLC39A14Q15043 492 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 KARSQ15046 597 aaKnown RBP12.95□□□□□ -0.34
VRK1-204ENST00000555351 FAM171A1Q5VUB5 890 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 TMC5Q6UXY8 1006 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 TRIM67Q6ZTA4 783 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 CCDC149Q6ZUS6 474 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 OTOP3Q7RTS5 596 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 UBALD2Q8IYN6 164 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 C12orf76Q8N812 135 aaPredicted RBP12.95□□□□□ -0.34
VRK1-204ENST00000555351 TDRD5Q8NAT2 981 aaKnown RBP12.95□□□□□ -0.34
VRK1-204ENST00000555351 RASSF8Q8NHQ8 419 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 LNX1Q8TBB1 728 aaPredicted RBP12.95□□□□□ -0.34
VRK1-204ENST00000555351 ACSF2Q96CM8 615 aaPredicted RBP12.95□□□□□ -0.34
VRK1-204ENST00000555351 MFSD14AQ96MC6 490 aa12.95□□□□□ -0.34
VRK1-204ENST00000555351 MTCL1Q9Y4B5 1905 aaKnown RBP12.95□□□□□ -0.34
VRK1-204ENST00000555351 FAM86C2PA6NEL3 165 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 TGM5O43548 720 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 TRAK2O60296 914 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 B3GAT3O94766 335 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 POU2F2P09086 479 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 CLTAP09496 248 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 HNRNPA1P09651 372 aaKnown RBP eCLIP12.94□□□□□ -0.34
VRK1-204ENST00000555351 HOXA9P31269 272 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 NASPP49321 788 aaPredicted RBP12.94□□□□□ -0.34
VRK1-204ENST00000555351 POU5F1Q01860 360 aaKnown RBP12.94□□□□□ -0.34
VRK1-204ENST00000555351 SIGLEC14Q08ET2 396 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 PSMD5Q16401 504 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 RTP2Q5QGT7 225 aa12.94□□□□□ -0.34
VRK1-204ENST00000555351 MYCT1Q8N699 235 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms