RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CASP4P49662 377 aa15.08■□□□□ 0.01
LIMS1-215ENST00000544547 NOP14P78316 857 aaKnown RBP15.08■□□□□ 0.01
LIMS1-215ENST00000544547 FAM102BQ5T8I3 360 aa15.08■□□□□ 0.01
LIMS1-215ENST00000544547 MKNK1Q9BUB5 465 aa15.08■□□□□ 0.01
LIMS1-215ENST00000544547 KIAA1683Q9H0B3 1180 aa15.08■□□□□ 0.01
LIMS1-215ENST00000544547 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.08■□□□□ 0.015e-7■■■■■ 54.8
LIMS1-215ENST00000544547 DDX18Q9NVP1 670 aaKnown RBP15.08■□□□□ 0.01
LIMS1-215ENST00000544547 CYP39A1Q9NYL5 469 aa15.08■□□□□ 0.01
LIMS1-215ENST00000544547 NAALADL1Q9UQQ1 740 aa15.08■□□□□ 0.01
LIMS1-215ENST00000544547 USP17L10C9JJH3 530 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 CD58P19256 250 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 MAGEA4P43358 317 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 SPRED3Q2MJR0 410 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 SLC12A6Q9UHW9 1150 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 UNC5CO95185 931 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 ICA1Q05084 483 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 AUHQ13825 339 aaKnown RBP15.08■□□□□ 0
LIMS1-215ENST00000544547 KPNB1Q14974 876 aaKnown RBP15.08■□□□□ 0
LIMS1-215ENST00000544547 ATL2Q8NHH9 583 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 NLRP7Q8WX94 980 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 EZH1Q92800 747 aaPredicted RBP15.08■□□□□ 0
LIMS1-215ENST00000544547 SLC4A9Q96Q91 983 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 CACNA1FO60840 1977 aa15.08■□□□□ 0
LIMS1-215ENST00000544547 FAM200BP0CF97 657 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 SAT1P21673 171 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 RPS6KA3P51812 740 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 PHEXP78562 749 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 CAV1Q03135 178 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 GRAMD4Q6IC98 578 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 CLEC4GQ6UXB4 293 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 BTNL9Q6UXG8 535 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 C3orf67Q6ZVT6 689 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 SLC13A5Q86YT5 568 aaPredicted RBP15.07■□□□□ 0
LIMS1-215ENST00000544547 C11orf70Q9BRQ4 267 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 H7C0C1 242 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 SLC37A4O43826 429 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 ATP5OP48047 213 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 ARSEP51690 589 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 NT5DC3Q86UY8 548 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 FBXO11Q86XK2 927 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 PPM1NQ8N819 430 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 CENPTQ96BT3 561 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 STK33Q9BYT3 514 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 AKAP12Q02952 1782 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 FAM208AQ9UK61 1670 aaKnown RBP15.07■□□□□ 0
LIMS1-215ENST00000544547 XRN1Q8IZH2 1706 aaKnown RBP15.07■□□□□ 0
LIMS1-215ENST00000544547 KRT4P19013 534 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 PTPN4P29074 926 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 PDE1BQ01064 536 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 CXorf38Q8TB03 319 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 IWS1Q96ST2 819 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 MXD3Q9BW11 206 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 SLCO1B3Q9NPD5 702 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 GDF11O95390 407 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 ESRRGP62508 458 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 EXOC3L1Q86VI1 746 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 CDAN1Q8IWY9 1227 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 FITM2Q8N6M3 262 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 POP1Q99575 1024 aaKnown RBP15.07■□□□□ 0
LIMS1-215ENST00000544547 NEU2Q9Y3R4 380 aa15.07■□□□□ 0
LIMS1-215ENST00000544547 SPDYE5A6NIY4 337 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 GAP43P17677 238 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 RIPK1Q13546 671 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 HIC1Q14526 733 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 ZC2HC1CQ53FD0 456 aaPredicted RBP15.06■□□□□ 0
LIMS1-215ENST00000544547 ATXN2LQ8WWM7 1075 aaKnown RBP15.06■□□□□ 0
LIMS1-215ENST00000544547 NRXN3Q9Y4C0 1643 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 EMSYQ7Z589 1322 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 LOC100653049A0A140TA62 436 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 IQANK1A0A1B0GTG1 560 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 KRT34O76011 436 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 GEN1Q17RS7 908 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 NBPF20Q3BBV1 942 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 CWF19L1Q69YN2 538 aaKnown RBP15.06■□□□□ 0
LIMS1-215ENST00000544547 IRGCQ6NXR0 463 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 SCYL2Q6P3W7 929 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 ANO5Q75V66 913 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 POMGNT1Q8WZA1 660 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 PURBQ96QR8 312 aaKnown RBP15.06■□□□□ 0
LIMS1-215ENST00000544547 GORASP1Q9BQQ3 440 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 ANO3Q9BYT9 981 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 MAD2L2Q9UI95 211 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 SMG5Q9UPR3 1016 aaKnown RBP15.06■□□□□ 0
LIMS1-215ENST00000544547 RIC1Q4ADV7 1423 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 PNMA6FA0A0J9YX94 578 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 TCP10L2B9ZVM9 353 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 FECHP22830 423 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 SNX16P57768 344 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 DSG1Q02413 1049 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 TNFAIP1Q13829 316 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 EPC2Q52LR7 807 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 C2CD6Q53TS8 623 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 LRRC74BQ6ZQY2 392 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 FAM196AQ6ZSG2 479 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 DEPTORQ8TB45 409 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 SCFD2Q8WU76 684 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 NUDT12Q9BQG2 462 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 XAB2Q9HCS7 855 aaKnown RBP15.06■□□□□ 0
LIMS1-215ENST00000544547 BCAP29Q9UHQ4 241 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 KRT36O76013 467 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms