RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 MYBP10242 640 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 HOXD13P35453 343 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 KNOP1Q1ED39 458 aaKnown RBP13□□□□□ -0.33
CLIP1-208ENST00000537004 CCDC40Q4G0X9 1142 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 FIGNQ5HY92 759 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 ZC3H3Q8IXZ2 948 aaKnown RBP13□□□□□ -0.33
CLIP1-208ENST00000537004 TMEM192Q8IY95 271 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 FIBCD1Q8N539 461 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 PSPC1Q8WXF1 523 aaKnown RBP13□□□□□ -0.33
CLIP1-208ENST00000537004 KCND2Q9NZV8 630 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 LRFN2Q9ULH4 789 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 MRPL42Q9Y6G3 142 aaKnown RBP13□□□□□ -0.33
CLIP1-208ENST00000537004 PHLPP2Q6ZVD8 1323 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 SFI1A8K8P3 1242 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 USO1O60763 962 aaKnown RBP12.99□□□□□ -0.33
CLIP1-208ENST00000537004 PRPF6O94906 941 aaKnown RBP12.99□□□□□ -0.33
CLIP1-208ENST00000537004 GNA14O95837 355 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 RFC5P40937 340 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 BMT2Q1RMZ1 405 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 TSR1Q2NL82 804 aaKnown RBP12.99□□□□□ -0.33
CLIP1-208ENST00000537004 RNF169Q8NCN4 708 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 JPH2Q9BR39 696 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-208ENST00000537004 GPRC5CQ9NQ84 441 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 ANKEF1Q9NU02 776 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 AGPAT5Q9NUQ2 364 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 SIK3Q9Y2K2 1263 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 PCDHB7Q9Y5E2 793 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 COL4A6Q14031 1691 aa12.99□□□□□ -0.33
CLIP1-208ENST00000537004 A0A1W2PQJ5 194 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ARHGEF35A5YM69 484 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 GCNT3O95395 438 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 STAG3L1P0CL83 205 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ZSCAN20P17040 1043 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-208ENST00000537004 NR2F2P24468 414 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 CTNNB1P35222 781 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 MARSP56192 900 aaKnown RBP12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ZBED6P86452 979 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ADAM9Q13443 819 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 MYCT1Q8N699 235 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 RNF149Q8NC42 400 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 IQCDQ96DY2 449 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 CCDC43Q96MW1 224 aaKnown RBP12.98□□□□□ -0.33
CLIP1-208ENST00000537004 PARVGQ9HBI0 331 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 DNAI1Q9UI46 699 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 TRAF3IP3Q9Y228 551 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 BRWD1Q9NSI6 2320 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 MYH10P35580 1976 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 PDXKO00764 312 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 CETN3O15182 167 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 CTIFO43310 598 aaKnown RBP12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ZNF131P52739 623 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 FAM189BP81408 668 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ODR4Q5SWX8 454 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 WDR59Q6PJI9 974 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ZNF410Q86VK4 478 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ASAP3Q8TDY4 903 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 TSC1Q92574 1164 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 CHP1Q99653 195 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 PRDM4Q9UKN5 801 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 ODF2LQ9ULJ1 636 aa12.98□□□□□ -0.33
CLIP1-208ENST00000537004 PIN4Q9Y237 131 aaKnown RBP12.98□□□□□ -0.33
CLIP1-208ENST00000537004 TBKBP1A7MCY6 615 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 EIF3DO15371 548 aaKnown RBP eCLIP12.97□□□□□ -0.33
CLIP1-208ENST00000537004 CALUO43852 315 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-208ENST00000537004 DGAT1O75907 488 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 POU3F3P20264 500 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-208ENST00000537004 GUCY2CP25092 1073 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 BMPR1AP36894 532 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 GPM6BQ13491 265 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 SKIV2LQ15477 1246 aaKnown RBP12.97□□□□□ -0.33
CLIP1-208ENST00000537004 MEA1Q16626 185 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 CATSPER4Q7RTX7 472 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 ECHDC2Q86YB7 292 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 TRIM59Q8IWR1 403 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 ZNF710Q8N1W2 664 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 ACRBPQ8NEB7 543 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 ZNF397Q8NF99 534 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-208ENST00000537004 CLP1Q92989 425 aaKnown RBP12.97□□□□□ -0.33
CLIP1-208ENST00000537004 ATP6V0A4Q9HBG4 840 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 C1orf112Q9NSG2 853 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 FAM207AQ9NSI2 230 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-208ENST00000537004 TYW1Q9NV66 732 aaKnown RBP12.97□□□□□ -0.33
CLIP1-208ENST00000537004 SEL1LQ9UBV2 794 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 PPME1Q9Y570 386 aa12.97□□□□□ -0.33
CLIP1-208ENST00000537004 MEIS3P2A8K0S8 358 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 H3BNC9 293 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 FANCGO15287 622 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 ATF7P17544 494 aaPredicted RBP12.96□□□□□ -0.33
CLIP1-208ENST00000537004 NMT1P30419 496 aaKnown RBP12.96□□□□□ -0.33
CLIP1-208ENST00000537004 CDC42EP1Q00587 391 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 CAPSQ13938 189 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 PADI6Q6TGC4 694 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 MMRN2Q9H8L6 949 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 ALG13Q9NP73 1137 aaKnown RBP12.96□□□□□ -0.33
CLIP1-208ENST00000537004 LZTFL1Q9NQ48 299 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 RNF19AQ9NV58 838 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 TMEM161AQ9NX61 479 aa12.96□□□□□ -0.33
CLIP1-208ENST00000537004 DBR1Q9UK59 544 aaKnown RBP12.96□□□□□ -0.33
CLIP1-208ENST00000537004 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLIP1-208ENST00000537004 A0A0U1RQF3 1178 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms