RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ATAT1Q5SQI0 421 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 TMC5Q6UXY8 1006 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 CEP120Q8N960 986 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 RAD54LQ92698 747 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 BICD1Q96G01 975 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 REEP2Q9BRK0 252 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 NTPCRQ9BSD7 190 aaKnown RBP14.59□□□□□ -0.07
VPS28-211ENST00000530790 CXCL16Q9H2A7 254 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 PTPRHQ9HD43 1115 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 BLOC1S4Q9NUP1 217 aa14.59□□□□□ -0.07
VPS28-211ENST00000530790 K7ENM7 598 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 TBCAO75347 108 aaKnown RBP14.58□□□□□ -0.08
VPS28-211ENST00000530790 FAM13AO94988 1023 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 BRD1O95696 1058 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 PROZP22891 400 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 MARCKSP29966 332 aaPredicted RBP14.58□□□□□ -0.08
VPS28-211ENST00000530790 TXLNAP40222 546 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 NCKAP1LP55160 1127 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 PTPAQ15257 358 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 ARSHQ5FYA8 562 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 RTP2Q5QGT7 225 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 KANK3Q6NY19 840 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 ZPBP2Q6X784 338 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 TDRD5Q8NAT2 981 aaKnown RBP14.58□□□□□ -0.08
VPS28-211ENST00000530790 LARP4BQ92615 738 aaKnown RBP14.58□□□□□ -0.08
VPS28-211ENST00000530790 SNX27Q96L92 541 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 UROC1Q96N76 676 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 ACAP3Q96P50 834 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 PPP1R10Q96QC0 940 aaKnown RBP14.58□□□□□ -0.08
VPS28-211ENST00000530790 TTPALQ9BTX7 342 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 CCSER1Q9C0I3 900 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 SLC38A7Q9NVC3 462 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 FNIP2Q9P278 1114 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 RAPGEFL1Q9UHV5 662 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 FBXO2Q9UK22 296 aaPredicted RBP14.58□□□□□ -0.08
VPS28-211ENST00000530790 MTMR6Q9Y217 621 aa14.58□□□□□ -0.08
VPS28-211ENST00000530790 SMIM28A0A1B0GU29 152 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 C2CD4DB7Z1M9 353 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 TMEM189-UBE2V1I3L0A0 370 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 ABLIM1O14639 778 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 STX6O43752 255 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 SCP2P22307 547 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 MATR3P43243 847 aaKnown RBP eCLIP14.57□□□□□ -0.08
VPS28-211ENST00000530790 CEBPZQ03701 1054 aaKnown RBP14.57□□□□□ -0.08
VPS28-211ENST00000530790 MCM6Q14566 821 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 PSMD5Q16401 504 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 SPECC1Q5M775 1068 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 FAM171A1Q5VUB5 890 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 FAM173BQ6P4H8 233 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 PDXDC1Q6P996 788 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 C15orf39Q6ZRI6 1047 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 CCDC149Q6ZUS6 474 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 GPR149Q86SP6 731 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 CEP57Q86XR8 500 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 GLYCTKQ8IVS8 523 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 HSCBQ8IWL3 235 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 MYCT1Q8N699 235 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 CMASQ8NFW8 434 aaPredicted RBP14.57□□□□□ -0.08
VPS28-211ENST00000530790 LRRC15Q8TF66 581 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 EDAQ92838 391 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 ZHX3Q9H4I2 956 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 ZSCAN16Q9H4T2 348 aaPredicted RBP14.57□□□□□ -0.08
VPS28-211ENST00000530790 PARVGQ9HBI0 331 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 STK17AQ9UEE5 414 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 CCDC39Q9UFE4 941 aa14.57□□□□□ -0.08
VPS28-211ENST00000530790 HNRNPDLO14979 420 aaKnown RBP14.56□□□□□ -0.08
VPS28-211ENST00000530790 B3GAT3O94766 335 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 C1RP00736 705 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 RPL17P18621 184 aaKnown RBP14.56□□□□□ -0.08
VPS28-211ENST00000530790 LIG4P49917 911 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 CLCNKBP51801 687 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 ZNF131P52739 623 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 PTPN21Q16825 1174 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 XKR4Q5GH76 650 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 PRSS55Q6UWB4 352 aaPredicted RBP14.56□□□□□ -0.08
VPS28-211ENST00000530790 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.56□□□□□ -0.08
VPS28-211ENST00000530790 HAUS6Q7Z4H7 955 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 PALB2Q86YC2 1186 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 HDAC7Q8WUI4 952 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 PIK3R5Q8WYR1 880 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 SNX21Q969T3 373 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 EPSTI1Q96J88 318 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 ZBTB45Q96K62 511 aaPredicted RBP14.56□□□□□ -0.08
VPS28-211ENST00000530790 PLEKHA4Q9H4M7 779 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 GOLGA2P5Q9HBQ8 144 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 CNTN3Q9P232 1028 aa14.56□□□□□ -0.08
VPS28-211ENST00000530790 SRPRBQ9Y5M8 271 aaKnown RBP14.56□□□□□ -0.08
VPS28-211ENST00000530790 CLDN3O15551 220 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 TGM5O43548 720 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 TRAPPC3O43617 180 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 HSP90AA1P07900 732 aaKnown RBP14.55□□□□□ -0.08
VPS28-211ENST00000530790 KCNE1P15382 129 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 ABCD1P33897 745 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 ZXDAP98168 799 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 MCL1Q07820 350 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 UPP1Q16831 310 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 DCLRE1AQ6PJP8 1040 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 ALKAL1Q6UXT8 129 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 CYP26C1Q6V0L0 522 aa14.55□□□□□ -0.08
VPS28-211ENST00000530790 KRI1Q8N9T8 703 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms