RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 RHOBTB2Q9BYZ6 727 aa17.24■□□□□ 0.35
HDAC4-213ENST00000496347 GPR62Q9BZJ7 368 aa17.24■□□□□ 0.35
HDAC4-213ENST00000496347 CCSER1Q9C0I3 900 aa17.24■□□□□ 0.35
HDAC4-213ENST00000496347 POMKQ9H5K3 350 aa17.24■□□□□ 0.35
HDAC4-213ENST00000496347 SLC38A7Q9NVC3 462 aa17.24■□□□□ 0.35
HDAC4-213ENST00000496347 HCN4Q9Y3Q4 1203 aa17.24■□□□□ 0.35
HDAC4-213ENST00000496347 ABLIM1O14639 778 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 TADA2AO75478 443 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 ABCD1P33897 745 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 ZNF131P52739 623 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 NCKAP1LP55160 1127 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 GRIN1Q05586 938 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 KARSQ15046 597 aaKnown RBP17.23■□□□□ 0.35
HDAC4-213ENST00000496347 XKR4Q5GH76 650 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 ATAT1Q5SQI0 421 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 PDXDC1Q6P996 788 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 TAS1R1Q7RTX1 841 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 SNX21Q969T3 373 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 SNX27Q96L92 541 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 PAAF1Q9BRP4 392 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 MAN1C1Q9NR34 630 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 BLOC1S4Q9NUP1 217 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 FNIP2Q9P278 1114 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 ANKFY1Q9P2R3 1169 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 CACNG4Q9UBN1 327 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 MTMR6Q9Y217 621 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 WDFY4Q6ZS81 3184 aa17.23■□□□□ 0.35
HDAC4-213ENST00000496347 SFI1A8K8P3 1242 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 TBCAO75347 108 aaKnown RBP17.22■□□□□ 0.35
HDAC4-213ENST00000496347 TXLNAP40222 546 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 ARSHQ5FYA8 562 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 GLRA4Q5JXX5 417 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 CYP26C1Q6V0L0 522 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 GPR149Q86SP6 731 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 C12orf76Q8N812 135 aaPredicted RBP17.22■□□□□ 0.35
HDAC4-213ENST00000496347 CEP120Q8N960 986 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 TDRD5Q8NAT2 981 aaKnown RBP17.22■□□□□ 0.35
HDAC4-213ENST00000496347 LRRC15Q8TF66 581 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 HASPINQ8TF76 798 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 HDAC7Q8WUI4 952 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 RIN2Q8WYP3 895 aaPredicted RBP17.22■□□□□ 0.35
HDAC4-213ENST00000496347 LARP4BQ92615 738 aaKnown RBP17.22■□□□□ 0.35
HDAC4-213ENST00000496347 TCHPQ9BT92 498 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 TTPALQ9BTX7 342 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 ZSCAN16Q9H4T2 348 aaPredicted RBP17.22■□□□□ 0.35
HDAC4-213ENST00000496347 PARVGQ9HBI0 331 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 CNTN3Q9P232 1028 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 STK17AQ9UEE5 414 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 CDH22Q9UJ99 828 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 FBXO2Q9UK22 296 aaPredicted RBP17.22■□□□□ 0.35
HDAC4-213ENST00000496347 USTQ9Y2C2 406 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.22■□□□□ 0.35
HDAC4-213ENST00000496347 CLIC4Q9Y696 253 aa17.22■□□□□ 0.35
HDAC4-213ENST00000496347 STX6O43752 255 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 FAM13AO94988 1023 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 PAPLNO95428 1278 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 KCNE1P15382 129 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 RTP2Q5QGT7 225 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 ALKAL1Q6UXT8 129 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 TMC5Q6UXY8 1006 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.21■□□□□ 0.35
HDAC4-213ENST00000496347 CCDC149Q6ZUS6 474 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 PIK3R5Q8WYR1 880 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 RABGGTAQ92696 567 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 EDAQ92838 391 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 B3GALT6Q96L58 329 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 ACAP3Q96P50 834 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 CXCL16Q9H2A7 254 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 PLEKHA4Q9H4M7 779 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 TSHZ2Q9NRE2 1034 aa17.21■□□□□ 0.35
HDAC4-213ENST00000496347 ARIH1Q9Y4X5 557 aaPredicted RBP17.21■□□□□ 0.35
HDAC4-213ENST00000496347 SRPRBQ9Y5M8 271 aaKnown RBP17.21■□□□□ 0.35
HDAC4-213ENST00000496347 NPHP3-ACAD11A0A0J9YXS1 232 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 SMIM28A0A1B0GU29 152 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 K7ENM7 598 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 HNRNPDLO14979 420 aaKnown RBP17.2■□□□□ 0.34
HDAC4-213ENST00000496347 KRT18P05783 430 aaKnown RBP17.2■□□□□ 0.34
HDAC4-213ENST00000496347 CACNB1Q02641 598 aaPredicted RBP17.2■□□□□ 0.34
HDAC4-213ENST00000496347 MCL1Q07820 350 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 MCM6Q14566 821 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 PTPN21Q16825 1174 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 UPP1Q16831 310 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 FAM171A1Q5VUB5 890 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 HAUS6Q7Z4H7 955 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 ZBTB33Q86T24 672 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 HSCBQ8IWL3 235 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 BICD1Q96G01 975 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 DDX27Q96GQ7 796 aaKnown RBP17.2■□□□□ 0.34
HDAC4-213ENST00000496347 CCDC39Q9UFE4 941 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 DOCK8Q8NF50 2099 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 PIEZO1Q92508 2521 aa17.2■□□□□ 0.34
HDAC4-213ENST00000496347 C2CD4DB7Z1M9 353 aa17.19■□□□□ 0.34
HDAC4-213ENST00000496347 CLDN3O15551 220 aa17.19■□□□□ 0.34
HDAC4-213ENST00000496347 TRAPPC3O43617 180 aa17.19■□□□□ 0.34
HDAC4-213ENST00000496347 B3GAT3O94766 335 aa17.19■□□□□ 0.34
HDAC4-213ENST00000496347 PIGRP01833 764 aa17.19■□□□□ 0.34
HDAC4-213ENST00000496347 WEE2P0C1S8 567 aa17.19■□□□□ 0.34
HDAC4-213ENST00000496347 HARSP12081 509 aaKnown RBP17.19■□□□□ 0.34
HDAC4-213ENST00000496347 PDIA4P13667 645 aaKnown RBP17.19■□□□□ 0.34
HDAC4-213ENST00000496347 SP100P23497 879 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms