RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 DSG1Q02413 1049 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 CBX2Q14781 532 aaPredicted RBP22.38■■□□□ 1.17
HDAC4-209ENST00000487617 USP41Q3LFD5 358 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 KIAA0319Q5VV43 1072 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 ZPBP2Q6X784 338 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 HASPINQ8TF76 798 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 B3GALT6Q96L58 329 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 ACAP3Q96P50 834 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 PPP1R10Q96QC0 940 aaKnown RBP22.38■■□□□ 1.17
HDAC4-209ENST00000487617 PHF7Q9BWX1 381 aaPredicted RBP22.38■■□□□ 1.17
HDAC4-209ENST00000487617 CHST7Q9NS84 486 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 BDP1A6H8Y1 2624 aa22.38■■□□□ 1.17
HDAC4-209ENST00000487617 SF3B1O75533 1304 aaKnown RBP eCLIP22.37■■□□□ 1.174e-12■■■■■ 275.7
HDAC4-209ENST00000487617 TRAK2O60296 914 aa22.37■■□□□ 1.17
HDAC4-209ENST00000487617 KIF4AO95239 1232 aa22.37■■□□□ 1.17
HDAC4-209ENST00000487617 ZSCAN22P10073 491 aaPredicted RBP22.37■■□□□ 1.17
HDAC4-209ENST00000487617 MATR3P43243 847 aaKnown RBP eCLIP22.37■■□□□ 1.17
HDAC4-209ENST00000487617 CLCN4P51793 760 aa22.37■■□□□ 1.17
HDAC4-209ENST00000487617 ITIH3Q06033 890 aa22.37■■□□□ 1.17
HDAC4-209ENST00000487617 NOLC1Q14978 699 aaKnown RBP eCLIP22.37■■□□□ 1.17
HDAC4-209ENST00000487617 RARS2Q5T160 578 aaKnown RBP22.37■■□□□ 1.17
HDAC4-209ENST00000487617 CES5AQ6NT32 575 aa22.37■■□□□ 1.17
HDAC4-209ENST00000487617 C12orf76Q8N812 135 aaPredicted RBP22.37■■□□□ 1.17
HDAC4-209ENST00000487617 LINC00301Q8NCQ3 95 aa22.37■■□□□ 1.17
HDAC4-209ENST00000487617 C1QTNF1Q9BXJ1 281 aa22.37■■□□□ 1.17
HDAC4-209ENST00000487617 ADAM7Q9H2U9 754 aa22.37■■□□□ 1.17
HDAC4-209ENST00000487617 SMIM28A0A1B0GU29 152 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 SPDYE4A6NLX3 237 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 PI4K2BG5E9Z4 385 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 SPTLC2O15270 562 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 TEX28O15482 410 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 CLDN3O15551 220 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 ADH1AP07327 375 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 SCP2P22307 547 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 ALKAL1Q6UXT8 129 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 CCDC73Q6ZRK6 1079 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 DYMQ7RTS9 669 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 RIN2Q8WYP3 895 aaPredicted RBP22.36■■□□□ 1.17
HDAC4-209ENST00000487617 KCNN1Q92952 543 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 RPGRIP1Q96KN7 1286 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 SNX27Q96L92 541 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 FBXL18Q96ME1 805 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 RXFP1Q9HBX9 757 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 CDH22Q9UJ99 828 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 TBX20Q9UMR3 447 aa22.36■■□□□ 1.17
HDAC4-209ENST00000487617 LIG4P49917 911 aa22.35■■□□□ 1.17
HDAC4-209ENST00000487617 MCL1Q07820 350 aa22.35■■□□□ 1.17
HDAC4-209ENST00000487617 FOXD4L6Q3SYB3 417 aaPredicted RBP22.35■■□□□ 1.17
HDAC4-209ENST00000487617 XKR4Q5GH76 650 aa22.35■■□□□ 1.17
HDAC4-209ENST00000487617 KANK3Q6NY19 840 aa22.35■■□□□ 1.17
HDAC4-209ENST00000487617 FOXD4L3Q6VB84 417 aaPredicted RBP22.35■■□□□ 1.17
HDAC4-209ENST00000487617 SV2BQ7L1I2 683 aa22.35■■□□□ 1.17
HDAC4-209ENST00000487617 UROC1Q96N76 676 aa22.35■■□□□ 1.17
HDAC4-209ENST00000487617 PANK2Q9BZ23 570 aa22.35■■□□□ 1.17
HDAC4-209ENST00000487617 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.35■■□□□ 1.17
HDAC4-209ENST00000487617 LOC730098B7Z3J9 87 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 HNRNPDLO14979 420 aaKnown RBP22.34■■□□□ 1.17
HDAC4-209ENST00000487617 PPP6R2O75170 966 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 F13A1P00488 732 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 NMT1P30419 496 aaKnown RBP22.34■■□□□ 1.17
HDAC4-209ENST00000487617 STAT6P42226 847 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 SEZ6Q53EL9 994 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 FAM171A1Q5VUB5 890 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 DCLRE1AQ6PJP8 1040 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 CEP57Q86XR8 500 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 GPR65Q8IYL9 337 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 DDX12PQ92771 950 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 RIPOR3Q96MK2 946 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 GOLGA2P5Q9HBQ8 144 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 SLC38A7Q9NVC3 462 aa22.34■■□□□ 1.17
HDAC4-209ENST00000487617 MYMKA6NI61 221 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 B3GAT3O94766 335 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 YEATS4O95619 227 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 GLUD1P00367 558 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 WEE2P0C1S8 567 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 ALADP13716 330 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 ABCD1P33897 745 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 MTHFRP42898 656 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 CLCNKBP51801 687 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 CREMQ03060 361 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 ELAVL2Q12926 359 aaKnown RBP22.33■■□□□ 1.17
HDAC4-209ENST00000487617 RTP2Q5QGT7 225 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 PRSS55Q6UWB4 352 aaPredicted RBP22.33■■□□□ 1.17
HDAC4-209ENST00000487617 RNF135Q8IUD6 432 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 ZMAT2Q96NC0 199 aaKnown RBP22.33■■□□□ 1.17
HDAC4-209ENST00000487617 NECTIN4Q96NY8 510 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 FIZ1Q96SL8 496 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 TTPALQ9BTX7 342 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 HAPLN2Q9GZV7 340 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 SFXN1Q9H9B4 322 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 CNTN3Q9P232 1028 aa22.33■■□□□ 1.17
HDAC4-209ENST00000487617 MYH11P35749 1972 aa22.32■■□□□ 1.16
HDAC4-209ENST00000487617 A0A087X0B3 334 aa22.32■■□□□ 1.16
HDAC4-209ENST00000487617 DCXO43602 365 aa22.32■■□□□ 1.16
HDAC4-209ENST00000487617 KCNE1P15382 129 aa22.32■■□□□ 1.16
HDAC4-209ENST00000487617 SOX4Q06945 474 aaPredicted RBP22.32■■□□□ 1.16
HDAC4-209ENST00000487617 PKP1Q13835 747 aa22.32■■□□□ 1.16
HDAC4-209ENST00000487617 UPP1Q16831 310 aa22.32■■□□□ 1.16
HDAC4-209ENST00000487617 ATAT1Q5SQI0 421 aa22.32■■□□□ 1.16
HDAC4-209ENST00000487617 TMC5Q6UXY8 1006 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms