RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 CCDC43Q96MW1 224 aaKnown RBP15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 RPP25Q9BUL9 199 aaKnown RBP15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 BCO2Q9BYV7 579 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 PDZD7Q9H5P4 517 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 BRMS1Q9HCU9 246 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 SPATA6Q9NWH7 488 aaPredicted RBP15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 NCDNQ9UBB6 729 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 LAMTOR5O43504 91 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 LRRN2O75325 713 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 ANAPC15P60006 121 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 GPC5P78333 572 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 SNW1Q13573 536 aaKnown RBP15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 HSP90AA2PQ14568 343 aaPredicted RBP15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 RSPO4Q2I0M5 234 aaPredicted RBP15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 LIN9Q5TKA1 542 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 CDCA2Q69YH5 1023 aaPredicted RBP15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 GRASPQ7Z6J2 395 aaPredicted RBP15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 NOSTRINQ8IVI9 506 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 GPR65Q8IYL9 337 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 KIFC3Q9BVG8 833 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 FZD8Q9H461 694 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 SNTG2Q9NY99 539 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 DLL3Q9NYJ7 618 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 CACNA1BQ00975 2339 aa15.31■□□□□ 0.04
SQSTM1-208ENST00000485412 KANSL1LA0AUZ9 987 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 TADA2AO75478 443 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 RECQL4O94761 1208 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 LIG1P18858 919 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 UBXN2BQ14CS0 331 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 ANKRD1Q15327 319 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 MLF2Q15773 248 aaPredicted RBP15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 ECM1Q16610 540 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 PARM1Q6UWI2 310 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 PPP4R3CPQ6ZMV5 832 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 MTSS1LQ765P7 747 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 SUMF1Q8NBK3 374 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 FGF14Q92915 247 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 CLSTN3Q9BQT9 956 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 CCDC113Q9H0I3 377 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 CDH7Q9ULB5 785 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 NCOR2Q9Y618 2525 aa15.3■□□□□ 0.04
SQSTM1-208ENST00000485412 SF3B1O75533 1304 aaKnown RBP eCLIP15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 SPTLC1O15269 473 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 SEC24BO95487 1268 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 PRKCQQ04759 706 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 TUSC3Q13454 348 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 ZNF528Q3MIS6 628 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 PPM1LQ5SGD2 360 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 VARS2Q5ST30 1063 aaKnown RBP15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 FAM171A1Q5VUB5 890 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 CEP57Q86XR8 500 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 MAML2Q8IZL2 1156 aaPredicted RBP15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 LNX1Q8TBB1 728 aaPredicted RBP15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 BORCS6Q96GS4 357 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 FBXW11Q9UKB1 542 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 FBXO4Q9UKT5 387 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 POLIQ9UNA4 740 aa15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 PDCD11Q14690 1871 aaKnown RBP15.29■□□□□ 0.04
SQSTM1-208ENST00000485412 ZMYM2Q9UBW7 1377 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 CITO14578 2027 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 PRKCBP05771 671 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 HNRNPA1P09651 372 aaKnown RBP eCLIP15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 SDHBP21912 280 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 NEK4P51957 841 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 PFKPQ01813 784 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 CSTF1Q05048 431 aaKnown RBP15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 NBR1Q14596 966 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 ZNF174Q15697 407 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 FAM187BQ17R55 369 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 SLC44A4Q53GD3 710 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 GLRA4Q5JXX5 417 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 ATRIPQ8WXE1 791 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 SECISBP2LQ93073 1101 aaKnown RBP15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 TUFT1Q9NNX1 390 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 PRMT7Q9NVM4 692 aaPredicted RBP15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 GDAQ9Y2T3 454 aa15.28■□□□□ 0.04
SQSTM1-208ENST00000485412 FAM170BA6NMN3 283 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 CCL16O15467 120 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 XYLBO75191 536 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 C8AP07357 584 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 XRCC6P12956 609 aaKnown RBP eCLIP15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 MAGEA9P43362 315 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 PRPF4BQ13523 1007 aaKnown RBP15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 PSMD5Q16401 504 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 NT5DC1Q5TFE4 455 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 PADI6Q6TGC4 694 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 CD300LGQ6UXG3 332 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 RSPO2Q6UXX9 243 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 GPR161Q8N6U8 529 aaKnown RBP15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 MCPH1Q8NEM0 835 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 ITFG1Q8TB96 612 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 PIK3R5Q8WYR1 880 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 FGF13Q92913 245 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 PRIMPOLQ96LW4 560 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 CNTNAP3BQ96NU0 1288 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 KXD1Q9BQD3 176 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 TTPALQ9BTX7 342 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 POLR3CQ9BUI4 534 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 DDX23Q9BUQ8 820 aaKnown RBP15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 CNTNAP3Q9BZ76 1288 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms