RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	SMCR8	Q8TEV9	937 aa	Predicted RBP	5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	DYDC1	Q8WWB3	177 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	RSPH1	Q8WYR4	309 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	MAP4K1	Q92918	833 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	EVI5L	Q96CN4	794 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	OPTN	Q96CV9	577 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	RBM17	Q96I25	401 aa	Known RBP	5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	HHIPL1	Q96JK4	782 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	SMC6	Q96SB8	1091 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	EPC1	Q9H2F5	836 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	GOLPH3L	Q9H4A5	285 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	SLC5A4	Q9NY91	659 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	WDR35	Q9P2L0	1181 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	ZMYM5	Q9UJ78	669 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	SYNPO2	Q9UMS6	1093 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	MYRF	Q9Y2G1	1151 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	LRRC42	Q9Y546	428 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	ASB3	Q9Y575	518 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	SYNRG	Q9UMZ2	1314 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	ABCC12	Q96J65	1359 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	SHANK3	Q9BYB0	1731 aa		5.14	□□□□□ -1.59
PTCD3-212	ENST00000477520	PXDNL	A1KZ92	1463 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	CCDC162P	A2VCL2	907 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	FFAR3	O14843	346 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	BIRC5	O15392	142 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	ASAP2	O43150	1006 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	KRT86	O43790	486 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	AKAP8	O43823	692 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	PPP6R2	O75170	966 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	ATP5H	O75947	161 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	LMNA	P02545	664 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	RPSA	P08865	295 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	VIL1	P09327	827 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	GNAT1	P11488	350 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	CPA3	P15088	417 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	PNLIP	P16233	465 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	TCP1	P17987	556 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	PLCG1	P19174	1290 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	VCAM1	P19320	739 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	NR1D1	P20393	614 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	LMNB1	P20700	586 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	CCT6A	P40227	531 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	SKIV2L2	P42285	1042 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	RANBP1	P43487	201 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	KIR2DL1	P43626	348 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	KIR2DL2	P43627	348 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	GJA8	P48165	433 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	NCKAP1L	P55160	1127 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	ERVFRD-1	P60508	538 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	LACTB	P83111	547 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	MXRA7	P84157	204 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	RPL6	Q02878	288 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	PAK2	Q13177	524 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	CUL4B	Q13620	913 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	MYBPC2	Q14324	1141 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	NR1I3	Q14994	352 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	POSTN	Q15063	836 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	TSNAXIP1	Q2TAA8	658 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	DPCR1	Q3MIW9	517 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	CCDC152	Q4G0S7	254 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	AGBL2	Q5U5Z8	902 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	ZPBP2	Q6X784	338 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	CCDC129	Q6ZRS4	1044 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	DDX46	Q7L014	1031 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	IFT20	Q8IY31	132 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	FAM177A1	Q8N128	213 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	TMTC2	Q8N394	836 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	FBXL16	Q8N461	479 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	SAMD3	Q8N6K7	520 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	RETREG2	Q8NC44	543 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	STKLD1	Q8NE28	680 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	TEKT4	Q8WW24	435 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	CCT6B	Q92526	530 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	VWCE	Q96DN2	955 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	CYFIP2	Q96F07	1278 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	ATP6V1G3	Q96LB4	118 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	RAB3IP	Q96QF0	476 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	SLX1A	Q9BQ83	275 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	POLR3C	Q9BUI4	534 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	FOXP3	Q9BZS1	431 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	NSRP1	Q9H0G5	558 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	MIR1-1HG	Q9H1L0	117 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	MMADHC	Q9H3L0	296 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	NDUFA13	Q9P0J0	144 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	TSPYL4	Q9UJ04	414 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	PAIP2B	Q9ULR5	123 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	ATP8A1	Q9Y2Q0	1164 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	PCDHA5	Q9Y5H7	936 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	RFX7	Q2KHR2	1363 aa		5.13	□□□□□ -1.59
PTCD3-212	ENST00000477520	ADAMTS7	Q9UKP4	1686 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	ITGB4	P16144	1822 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	SBF2	Q86WG5	1849 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	CCT8L1P	A6NM43	557 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	CHL1	O00533	1208 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	TRAPPC3	O43617	180 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	MYL1	P05976	194 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	FAM163B	P0C2L3	166 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	LINGO3	P0C6S8	592 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	TROVE2	P10155	538 aa	Known RBP eCLIP	5.12	□□□□□ -1.59

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