RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 TJP2Q9UDY2 1190 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 NOCTQ9UK39 431 aaKnown RBP12.8□□□□□ -0.36
PTPRN-204ENST00000423636 TMEM253P0C7T8 217 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 CDH8P55286 799 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 MAP4K3Q8IVH8 894 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 FBXO25Q8TCJ0 367 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 SCFD2Q8WU76 684 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 RNF25Q96BH1 459 aaPredicted RBP12.8□□□□□ -0.36
PTPRN-204ENST00000423636 HES6Q96HZ4 224 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 GDF3Q9NR23 364 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 STXBP5LQ9Y2K9 1186 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 CSADQ9Y600 493 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 NOP56O00567 594 aaKnown RBP12.8□□□□□ -0.36
PTPRN-204ENST00000423636 SUPT20HL2P0C7V6 817 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 MFAP3P55082 362 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 DR1Q01658 176 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 GNPTABQ3T906 1256 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 SUPT20HL1Q3ZLR7 823 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 CYP4A22Q5TCH4 519 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 TXLNBQ8N3L3 684 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 GOLGA5Q8TBA6 731 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 BCAS4Q8TDM0 211 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 SLC16A10Q8TF71 515 aa12.8□□□□□ -0.36
PTPRN-204ENST00000423636 TAF1DQ9H5J8 278 aaPredicted RBP12.8□□□□□ -0.36
PTPRN-204ENST00000423636 MCM3APO60318 1980 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 GTPBP10A4D1E9 387 aaKnown RBP12.79□□□□□ -0.36
PTPRN-204ENST00000423636 MCM3P25205 808 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 STAT5BP51692 787 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 IFI16Q16666 785 aaKnown RBP12.79□□□□□ -0.36
PTPRN-204ENST00000423636 MIS18BP1Q6P0N0 1132 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 MMS22LQ6ZRQ5 1243 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 SYT11Q9BT88 431 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 PORCNQ9H237 461 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 HOXC10Q9NYD6 342 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 SAE1Q9UBE0 346 aaPredicted RBP12.79□□□□□ -0.36
PTPRN-204ENST00000423636 NUB1Q9Y5A7 615 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 MYH9P35579 1960 aaKnown RBP12.79□□□□□ -0.36
PTPRN-204ENST00000423636 GSTTP1A0A1W2PQM5 241 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 KRT10P13645 584 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 SFNP31947 248 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 ALDH5A1P51649 535 aaPredicted RBP12.79□□□□□ -0.36
PTPRN-204ENST00000423636 LMBR1Q8WVP7 490 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 CCDC114Q96M63 670 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 C1orf112Q9NSG2 853 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 TSKSQ9UJT2 592 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 NOVA2Q9UNW9 492 aaKnown RBP12.79□□□□□ -0.36
PTPRN-204ENST00000423636 CLEC11AQ9Y240 323 aa12.79□□□□□ -0.36
PTPRN-204ENST00000423636 GOLGA8SH3BPF8 625 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 THAP12O43422 761 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 SCP2P22307 547 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 BRD2P25440 801 aaKnown RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 RPL7AP62424 266 aaKnown RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 CAPSQ13938 189 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 KIF22Q14807 665 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 FAM71AQ8IYT1 594 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 DCPSQ96C86 337 aaKnown RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 CAPS2Q9BXY5 557 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 MED4Q9NPJ6 270 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 CHST7Q9NS84 486 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 KCND2Q9NZV8 630 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 SYNGAP1Q96PV0 1343 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 ATAD5Q96QE3 1844 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 DGAT1O75907 488 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 VNN1O95497 513 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 OATP04181 439 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 ZBTB48P10074 688 aaPredicted RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 MAPK4P31152 587 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 IRAK1P51617 712 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 IFFO1Q0D2I5 559 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 CRELD2Q6UXH1 353 aaPredicted RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 ANKS1BQ7Z6G8 1248 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 NEK9Q8TD19 979 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 SPATC1LQ9H0A9 340 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 ASCC2Q9H1I8 757 aaPredicted RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 SUCLA2Q9P2R7 463 aaPredicted RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 EXOC7Q9UPT5 735 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 R3HDM2Q9Y2K5 976 aaKnown RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 MAP3K6O95382 1288 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 MYL6P60660 151 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 DYNLT1P63172 113 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 KRT71Q3SY84 523 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 PRELID2Q8N945 189 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 CPB2Q96IY4 423 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 MINDY3Q9H8M7 445 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 TMEM8AQ9HCN3 771 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 TTC7AQ9ULT0 858 aaPredicted RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 NENFQ9UMX5 172 aa12.78□□□□□ -0.36
PTPRN-204ENST00000423636 UTP11Q9Y3A2 253 aaKnown RBP12.78□□□□□ -0.36
PTPRN-204ENST00000423636 CCDC66A2RUB6 948 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 SPATA31C2B4DYI2 1134 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 ACSL3O95573 720 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 ZNF286BP0CG31 522 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 RARAP10276 462 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 RPS12P25398 132 aaKnown RBP12.77□□□□□ -0.36
PTPRN-204ENST00000423636 ADCY2Q08462 1091 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 SMTNL2Q2TAL5 461 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 BRDTQ58F21 947 aaPredicted RBP12.77□□□□□ -0.36
PTPRN-204ENST00000423636 FOXR2Q6PJQ5 311 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 CCDC137Q6PK04 289 aaKnown RBP12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms