RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SORBS3O60504 671 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 ATP9AO75110 1047 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 SESN3P58005 492 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 CAV1Q03135 178 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 STAT4Q14765 748 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 PDK4Q16654 411 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 RBM26Q5T8P6 1007 aaKnown RBP11.41□□□□□ -0.58
USP54-204ENST00000422491 DSTYKQ6XUX3 929 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 ARHGAP22Q7Z5H3 698 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 TRABD2AQ86V40 505 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 RELL1Q8IUW5 271 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 SLFN12Q8IYM2 578 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 ETNPPLQ8TBG4 499 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 SCG3Q8WXD2 468 aaKnown RBP11.41□□□□□ -0.58
USP54-204ENST00000422491 GATA6Q92908 595 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 BTBD6Q96KE9 485 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 TRAIPQ9BWF2 469 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 ANKRD2Q9GZV1 360 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 ZCWPW1Q9H0M4 648 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 CHST7Q9NS84 486 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 MTMR4Q9NYA4 1195 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 PLIN4Q96Q06 1357 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 EIF3DO15371 548 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP54-204ENST00000422491 PRPF4O43172 522 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP54-204ENST00000422491 SPOPO43791 374 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 SPAG7O75391 227 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 TJP3O95049 919 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 SKIP12755 728 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 RFX1P22670 979 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 SLC18A1P54219 525 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 GSTO1P78417 241 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 MYL7Q01449 175 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 COG2Q14746 738 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 RCN1Q15293 331 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 TMED2Q15363 201 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 SLC45A4Q5BKX6 768 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 ZNF746Q6NUN9 644 aaPredicted RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 SYDE1Q6ZW31 735 aaPredicted RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 BRINP3Q76B58 766 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 ZNF804AQ7Z570 1209 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 CCDC125Q86Z20 511 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 RPUSD2Q8IZ73 545 aaKnown RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 RIBC1Q8N443 379 aaPredicted RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 WDR66Q8TBY9 1149 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 PCDHB18PQ96TA0 734 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 CADM1Q9BY67 442 aaKnown RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 TMX4Q9H1E5 349 aaPredicted RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 SAR1AQ9NR31 198 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 HNRNPCL1O60812 293 aaKnown RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 TBCAO75347 108 aaKnown RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 PYGLP06737 847 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 KCNA3P22001 575 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 GCAP28676 217 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 CDR2Q01850 454 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 ZNF543Q08ER8 600 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 SPARCL1Q14515 664 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 LLGL1Q15334 1064 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 TRIP13Q15645 432 aaPredicted RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 ZC3H12AQ5D1E8 599 aaKnown RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 CLNKQ7Z7G1 428 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 ATG4AQ8WYN0 398 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 AZIN2Q96A70 460 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 RBM41Q96IZ5 413 aaKnown RBP11.4□□□□□ -0.58
USP54-204ENST00000422491 BHMT2Q9H2M3 363 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 UBN1Q9NPG3 1134 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 ZFP69BQ9UJL9 534 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 ROBO1Q9Y6N7 1651 aa11.4□□□□□ -0.58
USP54-204ENST00000422491 A0A1W2PRG0 241 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L15C9J2P7 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L13C9JLJ4 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L11C9JVI0 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L18D6R9N7 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L22D6RA61 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L17D6RBQ6 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L19D6RCP7 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L20D6RJB6 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 C2CD2LO14523 706 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 CACNA2D1P54289 1103 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L24Q0WX57 530 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ACSBG2Q5FVE4 666 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 USP17L6PQ6QN14 398 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 LRRC74BQ6ZQY2 392 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 NLRP9Q7RTR0 991 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ATL2Q8NHH9 583 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ZNF564Q8TBZ8 553 aaPredicted RBP11.39□□□□□ -0.59
USP54-204ENST00000422491 C9orf72Q96LT7 481 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 DMAC2Q9NW81 257 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ANAPC5Q9UJX4 755 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ZNF652Q9Y2D9 606 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 NEU2Q9Y3R4 380 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 SPATA31A5Q5VU36 1347 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 SPATA31A6Q5VVP1 1343 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 SPATA31A7Q8IWB4 1347 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 FAM196BA6NMK8 535 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 SFI1A8K8P3 1242 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 PLSCR1O15162 318 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 TOM1O60784 492 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 KRT36O76013 467 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 FGFR1P11362 822 aa11.39□□□□□ -0.59
USP54-204ENST00000422491 ATF2P15336 505 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms