RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 MAGEA1P43355 309 aa16.8■□□□□ 0.28
LSM6-201ENST00000296581 KIF5AQ12840 1032 aa16.8■□□□□ 0.28
LSM6-201ENST00000296581 FSCN1Q16658 493 aaKnown RBP16.8■□□□□ 0.28
LSM6-201ENST00000296581 CPSF3Q9UKF6 684 aaKnown RBP16.8■□□□□ 0.28
LSM6-201ENST00000296581 GUCA1BQ9UMX6 200 aa16.8■□□□□ 0.28
LSM6-201ENST00000296581 PTPRJQ12913 1337 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 CCDC172P0C7W6 258 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 HARSP12081 509 aaKnown RBP16.79■□□□□ 0.28
LSM6-201ENST00000296581 TNNI1P19237 187 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 ADAM17P78536 824 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 BEX3Q00994 111 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 PRKCZQ05513 592 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 ZNF569Q5MCW4 686 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 EEF1DP3Q658K8 133 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 TXLNBQ8N3L3 684 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 HELQQ8TDG4 1101 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 ADAMTS1Q9UHI8 967 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 NENFQ9UMX5 172 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 SMIM35A0A1B0GVV1 85 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 FOXN3O00409 490 aaPredicted RBP16.79■□□□□ 0.28
LSM6-201ENST00000296581 MYL3P08590 195 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 TNFSF9P41273 254 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 CAP1Q01518 475 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 SP3Q02447 781 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 KIF22Q14807 665 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 ENOX2Q16206 610 aaKnown RBP16.79■□□□□ 0.28
LSM6-201ENST00000296581 ARHGAP44Q17R89 818 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 ZNF568Q3ZCX4 644 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 SEZ6Q53EL9 994 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 SRGAP1Q7Z6B7 1085 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 SLC35F6Q8N357 371 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 OLIG1Q8TAK6 271 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 NT5C1BQ96P26 610 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 SYT11Q9BT88 431 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 KATNAL1Q9BW62 490 aa16.79■□□□□ 0.28
LSM6-201ENST00000296581 LUC7LQ9NQ29 371 aaKnown RBP16.79■□□□□ 0.28
LSM6-201ENST00000296581 ANK1P16157 1881 aa16.78■□□□□ 0.28
LSM6-201ENST00000296581 APLP1P51693 650 aa16.78■□□□□ 0.28
LSM6-201ENST00000296581 GJA9P57773 515 aa16.78■□□□□ 0.28
LSM6-201ENST00000296581 PURAQ00577 322 aaKnown RBP16.78■□□□□ 0.28
LSM6-201ENST00000296581 CDC42EP1Q00587 391 aa16.78■□□□□ 0.28
LSM6-201ENST00000296581 TDRD10Q5VZ19 366 aaKnown RBP16.78■□□□□ 0.28
LSM6-201ENST00000296581 LMBRD2Q68DH5 695 aaPredicted RBP16.78■□□□□ 0.28
LSM6-201ENST00000296581 KRT222Q8N1A0 295 aa16.78■□□□□ 0.28
LSM6-201ENST00000296581 NLRP7Q8WX94 980 aa16.78■□□□□ 0.28
LSM6-201ENST00000296581 KREMEN1Q96MU8 473 aa16.78■□□□□ 0.28
LSM6-201ENST00000296581 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.78■□□□□ 0.28
LSM6-201ENST00000296581 UPF3AQ9H1J1 476 aaKnown RBP16.78■□□□□ 0.28
LSM6-201ENST00000296581 CDT1Q9H211 546 aa16.78■□□□□ 0.28
LSM6-201ENST00000296581 KPNA6O60684 536 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 PSEN1P49768 467 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 AP3M2P53677 418 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 MFAP3P55082 362 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 NKX3-2P78367 333 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 SURF1Q15526 300 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 C10orf76Q5T2E6 689 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 KAT5Q92993 513 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 PPP1R16BQ96T49 567 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 ADAMTS10Q9H324 1103 aa16.77■□□□□ 0.28
LSM6-201ENST00000296581 HOXC8P31273 242 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 FAM193AP78312 1265 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 HIC1Q14526 733 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 BMS1Q14692 1282 aaKnown RBP16.77■□□□□ 0.27
LSM6-201ENST00000296581 VPS36Q86VN1 386 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 WDR49Q8IV35 697 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 SHC3Q92529 594 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 FAM84AQ96KN4 292 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 FAM81BQ96LP2 452 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 DUSP10Q9Y6W6 482 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 ATP8B3O60423 1300 aa16.77■□□□□ 0.27
LSM6-201ENST00000296581 TULP1O00294 542 aaPredicted RBP16.76■□□□□ 0.27
LSM6-201ENST00000296581 VNN1O95497 513 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 HLA-DRAP01903 254 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 MCF2P10911 925 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 CYP2C9P11712 490 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 GCNT1Q02742 428 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 TMEM132AQ24JP5 1023 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 FAM71AQ8IYT1 594 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 PPM1KQ8N3J5 372 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 SLC30A5Q8TAD4 765 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 PDZD7Q9H5P4 517 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 NAGPAQ9UK23 515 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 TRIP12Q14669 1992 aaPredicted RBP16.76■□□□□ 0.27
LSM6-201ENST00000296581 MYADML2A6NDP7 307 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 SEPT4O43236 478 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 CSDE1O75534 798 aaKnown RBP16.76■□□□□ 0.27
LSM6-201ENST00000296581 ARF4P18085 180 aaPredicted RBP16.76■□□□□ 0.27
LSM6-201ENST00000296581 CHMP4BP1P59074 171 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 POU5F1Q01860 360 aaKnown RBP16.76■□□□□ 0.27
LSM6-201ENST00000296581 NAB2Q15742 525 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 OR5B17Q8NGF7 314 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 SCN10AQ9Y5Y9 1956 aa16.76■□□□□ 0.27
LSM6-201ENST00000296581 GPR25O00155 361 aa16.75■□□□□ 0.27
LSM6-201ENST00000296581 DDX3XO00571 662 aaKnown RBP eCLIP16.75■□□□□ 0.271e-8■■■■□ 19.9
LSM6-201ENST00000296581 TSPAN1O60635 241 aa16.75■□□□□ 0.27
LSM6-201ENST00000296581 GPR32O75388 356 aa16.75■□□□□ 0.27
LSM6-201ENST00000296581 URI1O94763 535 aaPredicted RBP16.75■□□□□ 0.27
LSM6-201ENST00000296581 C6orf222P0C671 652 aaPredicted RBP16.75■□□□□ 0.27
LSM6-201ENST00000296581 BIRC3Q13489 604 aa16.75■□□□□ 0.27
LSM6-201ENST00000296581 RUFY4Q6ZNE9 571 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms