RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 PIGRP01833 764 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 NMT1P30419 496 aaKnown RBP12.33□□□□□ -0.44
SF3B6-201ENST00000233468 GRM5P41594 1212 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 KRT17Q04695 432 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 FAM160A1Q05DH4 1040 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 COASYQ13057 564 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 PSMD2Q13200 908 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 BMS1Q14692 1282 aaKnown RBP12.33□□□□□ -0.44
SF3B6-201ENST00000233468 NOLC1Q14978 699 aaKnown RBP eCLIP12.33□□□□□ -0.44
SF3B6-201ENST00000233468 LONRF3Q496Y0 759 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 VARS2Q5ST30 1063 aaKnown RBP12.33□□□□□ -0.44
SF3B6-201ENST00000233468 L1TD1Q5T7N2 865 aaKnown RBP12.33□□□□□ -0.44
SF3B6-201ENST00000233468 AGMOQ6ZNB7 445 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 KRBA2Q6ZNG9 492 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 TAS1R3Q7RTX0 852 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 CDR2LQ86X02 465 aaPredicted RBP12.33□□□□□ -0.44
SF3B6-201ENST00000233468 SYCP3Q8IZU3 236 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 GJD3Q8N144 294 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 ZNF558Q96NG5 402 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 ACAP3Q96P50 834 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 GBP4Q96PP9 640 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 LMAN2LQ9H0V9 348 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 NXF3Q9H4D5 531 aaKnown RBP12.33□□□□□ -0.44
SF3B6-201ENST00000233468 PTPRHQ9HD43 1115 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 EXOC1Q9NV70 894 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 ANKFY1Q9P2R3 1169 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 PUF60Q9UHX1 559 aaKnown RBP12.33□□□□□ -0.44
SF3B6-201ENST00000233468 EVPLQ92817 2033 aa12.33□□□□□ -0.44
SF3B6-201ENST00000233468 ARL5CA6NH57 179 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 GOLGA6L22H0YM25 854 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 INPPL1O15357 1258 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 EIF3DO15371 548 aaKnown RBP eCLIP12.32□□□□□ -0.44
SF3B6-201ENST00000233468 ALDH2P05091 517 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 PROZP22891 400 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 SSTR3P32745 418 aaPredicted RBP12.32□□□□□ -0.44
SF3B6-201ENST00000233468 GTF2F1P35269 517 aaKnown RBP eCLIP12.32□□□□□ -0.44
SF3B6-201ENST00000233468 GATMP50440 423 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 UBE3AQ05086 875 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 MCL1Q07820 350 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 FAM26FQ5R3K3 315 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 ZBTB33Q86T24 672 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 THNSL1Q8IYQ7 743 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 TMEM87AQ8NBN3 555 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 PTCD2Q8WV60 388 aaKnown RBP12.32□□□□□ -0.44
SF3B6-201ENST00000233468 TIGD1Q96MW7 591 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 FIZ1Q96SL8 496 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 GAD1Q99259 594 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 TMEM175Q9BSA9 504 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 GTPBP4Q9BZE4 634 aaKnown RBP12.32□□□□□ -0.44
SF3B6-201ENST00000233468 CDT1Q9H211 546 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 RNF19AQ9NV58 838 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 TBC1D13Q9NVG8 400 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 SNTG2Q9NY99 539 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 TBC1D7Q9P0N9 293 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 HES2Q9Y543 173 aa12.32□□□□□ -0.44
SF3B6-201ENST00000233468 KIAA0391O15091 583 aaKnown RBP12.31□□□□□ -0.44
SF3B6-201ENST00000233468 GRM6O15303 877 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 KINO60870 393 aaKnown RBP12.31□□□□□ -0.44
SF3B6-201ENST00000233468 SMC2O95347 1197 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 CLTAP09496 248 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 HARSP12081 509 aaKnown RBP12.31□□□□□ -0.44
SF3B6-201ENST00000233468 AKAP5P24588 427 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 LTBRP36941 435 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 MLH1P40692 756 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 UBE2HP62256 183 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 SNRPFP62306 86 aaKnown RBP12.31□□□□□ -0.44
SF3B6-201ENST00000233468 POU5F1Q01860 360 aaKnown RBP12.31□□□□□ -0.44
SF3B6-201ENST00000233468 DLX2Q07687 328 aaPredicted RBP12.31□□□□□ -0.44
SF3B6-201ENST00000233468 GRIK3Q13003 919 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 CUL4BQ13620 913 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 EEF1DP3Q658K8 133 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 KCNT2Q6UVM3 1135 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 COLGALT1Q8NBJ5 622 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 PPP2R3CQ969Q6 453 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 TSPAN18Q96SJ8 248 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 MSTO1Q9BUK6 570 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 STRA6Q9BX79 667 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 BLZF1Q9H2G9 400 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 GOLPH3LQ9H4A5 285 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 CWH43Q9H720 699 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 SLC38A7Q9NVC3 462 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 RMND1Q9NWS8 449 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 SPG21Q9NZD8 308 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 GDAQ9Y2T3 454 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 HCN4Q9Y3Q4 1203 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 PLXNA4Q9HCM2 1894 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 UBE4BO95155 1302 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 WDR81Q562E7 1941 aa12.31□□□□□ -0.44
SF3B6-201ENST00000233468 OGTO15294 1046 aa12.3□□□□□ -0.44
SF3B6-201ENST00000233468 ZC3H11AO75152 810 aaKnown RBP eCLIP12.3□□□□□ -0.44
SF3B6-201ENST00000233468 RECQL4O94761 1208 aa12.3□□□□□ -0.44
SF3B6-201ENST00000233468 LDHAP00338 332 aaKnown RBP12.3□□□□□ -0.44
SF3B6-201ENST00000233468 POMCP01189 267 aa12.3□□□□□ -0.44
SF3B6-201ENST00000233468 EDN1P05305 212 aa12.3□□□□□ -0.44
SF3B6-201ENST00000233468 THP07101 528 aa12.3□□□□□ -0.44
SF3B6-201ENST00000233468 PLCB3Q01970 1234 aa12.3□□□□□ -0.44
SF3B6-201ENST00000233468 COL19A1Q14993 1142 aa12.3□□□□□ -0.44
SF3B6-201ENST00000233468 CLUL1Q15846 466 aa12.3□□□□□ -0.44
SF3B6-201ENST00000233468 ZC2HC1CQ53FD0 456 aaPredicted RBP12.3□□□□□ -0.44
SF3B6-201ENST00000233468 PDE12Q6L8Q7 609 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms