RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W ACS1Q01574 713 aa5.32□□□□□ -1.56
CAF40YNL288W AIM36Q03798 255 aa5.32□□□□□ -1.56
CAF40YNL288W GRX3Q03835 250 aa5.32□□□□□ -1.56
CAF40YNL288W API2Q04413 109 aa5.32□□□□□ -1.56
CAF40YNL288W LUC7Q07508 261 aaPredicted RBP5.32□□□□□ -1.56
CAF40YNL288W YOR378WQ08902 515 aa5.32□□□□□ -1.56
CAF40YNL288W IZH2Q12442 317 aa5.32□□□□□ -1.56
CAF40YNL288W NOP56Q12460 504 aaKnown RBP RIP-Chip data5.32□□□□□ -1.56not detected
CAF40YNL288W FRE6Q12473 712 aa5.32□□□□□ -1.56
CAF40YNL288W TRP4P07285 380 aaPredicted RBP5.31□□□□□ -1.56
CAF40YNL288W RPL35AP0CX84 120 aaKnown RBP5.31□□□□□ -1.56
CAF40YNL288W RPL35BP0CX85 120 aaKnown RBP5.31□□□□□ -1.56
CAF40YNL288W NAM2P11325 894 aa5.31□□□□□ -1.56
CAF40YNL288W MEK1P24719 497 aaPredicted RBP5.31□□□□□ -1.56
CAF40YNL288W ATG15P25641 520 aa5.31□□□□□ -1.56
CAF40YNL288W SPT10P35208 640 aa5.31□□□□□ -1.56
CAF40YNL288W YKR015CP36111 568 aa5.31□□□□□ -1.56
CAF40YNL288W FMP23P38231 175 aa5.31□□□□□ -1.56
CAF40YNL288W YER084WP40057 128 aa5.31□□□□□ -1.56
CAF40YNL288W PMT6P42934 759 aa5.31□□□□□ -1.56
CAF40YNL288W EFM3P47163 339 aa5.31□□□□□ -1.56
CAF40YNL288W SLI1P53304 468 aa5.31□□□□□ -1.56
CAF40YNL288W SAM50P53969 484 aa5.31□□□□□ -1.56
CAF40YNL288W DIG2Q03373 323 aaKnown RBP5.31□□□□□ -1.56
CAF40YNL288W RCF1Q03713 159 aa5.31□□□□□ -1.56
CAF40YNL288W TGS1Q12052 315 aa5.31□□□□□ -1.56
CAF40YNL288W MCT1Q12283 360 aa5.31□□□□□ -1.56
CAF40YNL288W PDE2P06776 526 aa5.3□□□□□ -1.56
CAF40YNL288W COX9P07255 59 aa5.3□□□□□ -1.56
CAF40YNL288W MRP1P10662 321 aaKnown RBP5.3□□□□□ -1.56
CAF40YNL288W MRPS28P21771 286 aa5.3□□□□□ -1.56
CAF40YNL288W PRE7P23724 241 aaKnown RBP5.3□□□□□ -1.56
CAF40YNL288W BOS1P25385 244 aa5.3□□□□□ -1.56
CAF40YNL288W AHC2P25649 128 aa5.3□□□□□ -1.56
CAF40YNL288W MRPS5P33759 307 aa5.3□□□□□ -1.56
CAF40YNL288W PAU24P38155 120 aa5.3□□□□□ -1.56
CAF40YNL288W YGP1P38616 354 aaKnown RBP5.3□□□□□ -1.56
CAF40YNL288W PRS3P38689 320 aaKnown RBP5.3□□□□□ -1.56
CAF40YNL288W PUG1P40100 303 aa5.3□□□□□ -1.56
CAF40YNL288W LOH1P47055 219 aa5.3□□□□□ -1.56
CAF40YNL288W SIP18P50263 79 aa5.3□□□□□ -1.56
CAF40YNL288W RSM23Q01163 450 aa5.3□□□□□ -1.56
CAF40YNL288W MAK3Q03503 176 aa5.3□□□□□ -1.56
CAF40YNL288W RRP17Q04031 235 aaPredicted RBP5.3□□□□□ -1.56
CAF40YNL288W YDR514CQ04408 483 aa5.3□□□□□ -1.56
CAF40YNL288W GAL83Q04739 417 aa5.3□□□□□ -1.56
CAF40YNL288W TSR2Q06672 205 aaKnown RBP5.3□□□□□ -1.56
CAF40YNL288W MDM36Q06820 579 aa5.3□□□□□ -1.56
CAF40YNL288W FRE5Q08908 694 aa5.3□□□□□ -1.56
CAF40YNL288W YPR1Q12458 312 aa5.3□□□□□ -1.56
CAF40YNL288W QCR7P00128 127 aa5.29□□□□□ -1.56
CAF40YNL288W TAL1P15019 335 aaKnown RBP5.29□□□□□ -1.56
CAF40YNL288W CLB2P24869 491 aa5.29□□□□□ -1.56
CAF40YNL288W ERG4P25340 473 aa5.29□□□□□ -1.56
CAF40YNL288W FUN26P31381 517 aa5.29□□□□□ -1.56
CAF40YNL288W DOA4P32571 926 aa5.29□□□□□ -1.56
CAF40YNL288W CLG1P35190 452 aa5.29□□□□□ -1.56
CAF40YNL288W ANR2P36090 516 aaPredicted RBP5.29□□□□□ -1.56
CAF40YNL288W APL3P38065 1025 aa5.29□□□□□ -1.56
CAF40YNL288W PEX32P38292 413 aa5.29□□□□□ -1.56
CAF40YNL288W YFL051CP43552 160 aa5.29□□□□□ -1.56
CAF40YNL288W YJL055WP47044 245 aa5.29□□□□□ -1.56
CAF40YNL288W YAE1P47118 141 aaPredicted RBP5.29□□□□□ -1.56
CAF40YNL288W BUL1P48524 976 aa5.29□□□□□ -1.56
CAF40YNL288W MTM1P53320 366 aa5.29□□□□□ -1.56
CAF40YNL288W ASI3P53983 676 aa5.29□□□□□ -1.56
CAF40YNL288W LAP3Q01532 483 aaKnown RBP RIP-Chip data5.29□□□□□ -1.56not detected
CAF40YNL288W YDR179W-AQ03983 463 aa5.29□□□□□ -1.56
CAF40YNL288W YDR391CQ04170 232 aa5.29□□□□□ -1.56
CAF40YNL288W RTN2Q12443 393 aa5.29□□□□□ -1.56
CAF40YNL288W CDC31P06704 161 aaKnown RBP5.28□□□□□ -1.56
CAF40YNL288W DSF1P0CX08 502 aa5.28□□□□□ -1.56
CAF40YNL288W YNR073CP0CX09 502 aa5.28□□□□□ -1.56
CAF40YNL288W MTR2P34232 184 aaKnown RBP5.28□□□□□ -1.56
CAF40YNL288W MTH1P35198 433 aa5.28□□□□□ -1.56
CAF40YNL288W FRM2P37261 193 aa5.28□□□□□ -1.56
CAF40YNL288W YGL204CP53089 101 aa5.28□□□□□ -1.56
CAF40YNL288W YLR152CP54072 576 aa5.28□□□□□ -1.56
CAF40YNL288W RBS1Q05672 457 aaKnown RBP5.28□□□□□ -1.56
CAF40YNL288W FIT3Q08907 204 aa5.28□□□□□ -1.56
CAF40YNL288W YEL009C-AA0A023PZF2 135 aa5.27□□□□□ -1.57
CAF40YNL288W REP1P03871 373 aa5.27□□□□□ -1.57
CAF40YNL288W SIR2P06700 562 aa5.27□□□□□ -1.57
CAF40YNL288W ARO7P32178 256 aa5.27□□□□□ -1.57
CAF40YNL288W PAU2P32612 120 aa5.27□□□□□ -1.57
CAF40YNL288W CLB6P32943 380 aa5.27□□□□□ -1.57
CAF40YNL288W SDS24P38314 527 aa5.27□□□□□ -1.57
CAF40YNL288W YBR220CP38318 560 aa5.27□□□□□ -1.57
CAF40YNL288W PCL6P40038 420 aa5.27□□□□□ -1.57
CAF40YNL288W RTT105P40063 208 aa5.27□□□□□ -1.57
CAF40YNL288W PIG2P40187 538 aa5.27□□□□□ -1.57
CAF40YNL288W DLS1P40366 167 aa5.27□□□□□ -1.57
CAF40YNL288W TIR3P40552 269 aa5.27□□□□□ -1.57
CAF40YNL288W YJL218WP40892 196 aaKnown RBP5.27□□□□□ -1.57
CAF40YNL288W GDS1P41913 522 aa5.27□□□□□ -1.57
CAF40YNL288W PMT5P52867 743 aa5.27□□□□□ -1.57
CAF40YNL288W MTL1P53214 551 aa5.27□□□□□ -1.57
CAF40YNL288W AAH1P53909 347 aa5.27□□□□□ -1.57
CAF40YNL288W NRK1P53915 240 aa5.27□□□□□ -1.57
CAF40YNL288W LRS4Q04087 347 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 85.6 ms