RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	ATG18	P43601	500 aa		13.47	□□□□□ -0.25
CCC1	YLR220W	YIP5	P53108	310 aa		13.47	□□□□□ -0.25
CCC1	YLR220W	GPI17	Q04080	534 aa		13.47	□□□□□ -0.25
CCC1	YLR220W	PEX30	Q06169	523 aa		13.47	□□□□□ -0.25
CCC1	YLR220W	FIT3	Q08907	204 aa		13.47	□□□□□ -0.25
CCC1	YLR220W	ATG41	Q12048	136 aa		13.47	□□□□□ -0.25
CCC1	YLR220W	RCN1	P36054	211 aa		13.46	□□□□□ -0.25
CCC1	YLR220W	SSH1	P38353	490 aa	Known RBP	13.46	□□□□□ -0.25
CCC1	YLR220W	ERJ5	P43613	295 aa	Predicted RBP	13.46	□□□□□ -0.25
CCC1	YLR220W	ACS1	Q01574	713 aa		13.46	□□□□□ -0.25
CCC1	YLR220W	PEX27	Q08580	376 aa		13.46	□□□□□ -0.25
CCC1	YLR220W	ORT1	Q12375	292 aa		13.46	□□□□□ -0.25
CCC1	YLR220W	RPN13	O13563	156 aa		13.45	□□□□□ -0.26
CCC1	YLR220W	YLR358C	O13565	187 aa		13.45	□□□□□ -0.26
CCC1	YLR220W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	13.45	□□□□□ -0.26	not detected
CCC1	YLR220W	RPS18A	P0CX55	146 aa	Known RBP	13.45	□□□□□ -0.26
CCC1	YLR220W	RPS18B	P0CX56	146 aa	Predicted RBP	13.45	□□□□□ -0.26
CCC1	YLR220W	YGP1	P38616	354 aa	Known RBP	13.45	□□□□□ -0.26
CCC1	YLR220W	YHK8	P38776	514 aa		13.45	□□□□□ -0.26
CCC1	YLR220W	YJL055W	P47044	245 aa		13.45	□□□□□ -0.26
CCC1	YLR220W	RAI1	P53063	387 aa	Known RBP	13.45	□□□□□ -0.26
CCC1	YLR220W	POP6	P53218	158 aa		13.45	□□□□□ -0.26
CCC1	YLR220W	NRK1	P53915	240 aa		13.45	□□□□□ -0.26
CCC1	YLR220W	ASR1	Q06834	288 aa		13.45	□□□□□ -0.26
CCC1	YLR220W	SSK1	Q07084	712 aa		13.45	□□□□□ -0.26
CCC1	YLR220W	DSF1	P0CX08	502 aa		13.44	□□□□□ -0.26
CCC1	YLR220W	YNR073C	P0CX09	502 aa		13.44	□□□□□ -0.26
CCC1	YLR220W	RPL35A	P0CX84	120 aa	Known RBP	13.44	□□□□□ -0.26
CCC1	YLR220W	RPL35B	P0CX85	120 aa	Known RBP	13.44	□□□□□ -0.26
CCC1	YLR220W	YMR144W	P40214	342 aa	Known RBP	13.44	□□□□□ -0.26
CCC1	YLR220W	MRH4	P53166	561 aa		13.44	□□□□□ -0.26
CCC1	YLR220W	HOM6	P31116	359 aa	Known RBP	13.43	□□□□□ -0.26
CCC1	YLR220W	SNC2	P33328	115 aa		13.43	□□□□□ -0.26
CCC1	YLR220W	PHB2	P50085	310 aa		13.43	□□□□□ -0.26
CCC1	YLR220W	HEM25	Q07534	307 aa		13.43	□□□□□ -0.26
CCC1	YLR220W	YBL113C	Q7M4S9	792 aa		13.43	□□□□□ -0.26
CCC1	YLR220W	CNE1	P27825	502 aa		13.42	□□□□□ -0.26
CCC1	YLR220W	MRT4	P33201	236 aa	Known RBP	13.42	□□□□□ -0.26
CCC1	YLR220W	MSS4	P38994	779 aa		13.42	□□□□□ -0.26
CCC1	YLR220W	BUD8	P41698	603 aa		13.42	□□□□□ -0.26
CCC1	YLR220W	SER2	P42941	309 aa		13.42	□□□□□ -0.26
CCC1	YLR220W	CWC23	P52868	283 aa	Predicted RBP	13.42	□□□□□ -0.26
CCC1	YLR220W	SMB1	P40018	196 aa	Known RBP	13.41	□□□□□ -0.26
CCC1	YLR220W	CIN2	P46670	268 aa		13.41	□□□□□ -0.26
CCC1	YLR220W	PXR1	P53335	271 aa	Predicted RBP	13.41	□□□□□ -0.26
CCC1	YLR220W	YNR048W	P53740	393 aa		13.41	□□□□□ -0.26
CCC1	YLR220W	YMR130W	Q04223	302 aa		13.41	□□□□□ -0.26
CCC1	YLR220W	RPL30	P14120	105 aa	Known RBP	13.4	□□□□□ -0.26
CCC1	YLR220W	CLB6	P32943	380 aa		13.4	□□□□□ -0.26
CCC1	YLR220W	PPZ2	P33329	710 aa		13.4	□□□□□ -0.26
CCC1	YLR220W	YGL159W	P53110	370 aa		13.4	□□□□□ -0.26
CCC1	YLR220W	SCW4	P53334	386 aa	Known RBP	13.4	□□□□□ -0.26
CCC1	YLR220W	ERV29	P53337	310 aa		13.4	□□□□□ -0.26
CCC1	YLR220W	TPO3	Q06451	622 aa		13.4	□□□□□ -0.26
CCC1	YLR220W	USB1	Q12208	290 aa	Known RBP	13.4	□□□□□ -0.26
CCC1	YLR220W	AFG1	P32317	509 aa		13.39	□□□□□ -0.27
CCC1	YLR220W	SPT14	P32363	452 aa		13.39	□□□□□ -0.27
CCC1	YLR220W	IRC18	P47056	224 aa		13.39	□□□□□ -0.27
CCC1	YLR220W	YJL016W	P47072	561 aa		13.39	□□□□□ -0.27
CCC1	YLR220W	IMD3	P50095	523 aa	Known RBP	13.39	□□□□□ -0.27
CCC1	YLR220W	MTL1	P53214	551 aa		13.39	□□□□□ -0.27
CCC1	YLR220W	RGC1	Q06108	1083 aa	Known RBP	13.39	□□□□□ -0.27
CCC1	YLR220W	YOR283W	Q12040	230 aa	Known RBP	13.39	□□□□□ -0.27
CCC1	YLR220W	PDA1	P16387	420 aa	Known RBP	13.38	□□□□□ -0.27
CCC1	YLR220W	SOL3	P38858	249 aa		13.38	□□□□□ -0.27
CCC1	YLR220W	OST1	P41543	476 aa	Known RBP	13.38	□□□□□ -0.27
CCC1	YLR220W	SYS1	P41544	203 aa		13.38	□□□□□ -0.27
CCC1	YLR220W	RNH201	P53942	307 aa		13.38	□□□□□ -0.27
CCC1	YLR220W	RRS1	Q08746	203 aa	Known RBP	13.38	□□□□□ -0.27
CCC1	YLR220W	FUR4	P05316	633 aa	Known RBP	13.37	□□□□□ -0.27
CCC1	YLR220W	SGA1	P08019	549 aa		13.37	□□□□□ -0.27
CCC1	YLR220W	MET3	P08536	511 aa		13.37	□□□□□ -0.27
CCC1	YLR220W	PET18	P25362	215 aa		13.37	□□□□□ -0.27
CCC1	YLR220W	DEG1	P31115	442 aa	Known RBP	13.37	□□□□□ -0.27
CCC1	YLR220W	YBR220C	P38318	560 aa		13.37	□□□□□ -0.27
CCC1	YLR220W	IPI1	P38803	334 aa	Predicted RBP	13.37	□□□□□ -0.27
CCC1	YLR220W	PIG2	P40187	538 aa		13.37	□□□□□ -0.27
CCC1	YLR220W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	13.37	□□□□□ -0.27	not detected
CCC1	YLR220W	PRE4	P30657	266 aa		13.36	□□□□□ -0.27
CCC1	YLR220W	REC114	P32841	428 aa		13.36	□□□□□ -0.27
CCC1	YLR220W	MTR2	P34232	184 aa	Known RBP	13.36	□□□□□ -0.27
CCC1	YLR220W	MIT1	P40002	666 aa		13.36	□□□□□ -0.27
CCC1	YLR220W	ATF1	P40353	525 aa		13.36	□□□□□ -0.27
CCC1	YLR220W	SPR28	Q04921	423 aa		13.36	□□□□□ -0.27
CCC1	YLR220W	YPR196W	Q06595	470 aa		13.36	□□□□□ -0.27
CCC1	YLR220W	HXT2	P23585	541 aa		13.35	□□□□□ -0.27
CCC1	YLR220W	GLC7	P32598	312 aa	Known RBP	13.35	□□□□□ -0.27
CCC1	YLR220W	TCM62	P38228	572 aa	Known RBP	13.35	□□□□□ -0.27
CCC1	YLR220W	HTD2	P38790	280 aa	Known RBP	13.35	□□□□□ -0.27
CCC1	YLR220W	INP53	Q12271	1107 aa		13.35	□□□□□ -0.27
CCC1	YLR220W	RNH203	Q12338	110 aa		13.35	□□□□□ -0.27
CCC1	YLR220W	SPS100	P13130	326 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	ARO3	P14843	370 aa	Known RBP	13.34	□□□□□ -0.27
CCC1	YLR220W	DBF20	P32328	564 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	MCH2	P36032	473 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	FLX1	P40464	311 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	AVT4	P50944	713 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	BUD25	P85052	153 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	YPL077C	Q02831	240 aa		13.34	□□□□□ -0.27
CCC1	YLR220W	DLT1	Q04216	342 aa		13.34	□□□□□ -0.27

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms