RNA–Protein interactions for RNA: YDL216C

RRI1, Transcript of Catalytic subunit of the COP9 signalosome (CSN) complex, yeast

Gene RRI1, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRI1	YDL216C	EMC2	P47133	292 aa	Known RBP	2.64	□□□□□ -1.99
RRI1	YDL216C	NBP35	P52920	328 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	KAP114	P53067	1004 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	NIF3	P53081	288 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	SWS2	P53937	143 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	YMR166C	Q03829	368 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	GRH1	Q04410	372 aa	Known RBP	2.64	□□□□□ -1.99
RRI1	YDL216C	CTS2	Q06350	511 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	ARV1	Q06541	321 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	CTR3	Q06686	241 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	TY3A-G	Q12173	290 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	SME1	Q12330	94 aa	Predicted RBP	2.64	□□□□□ -1.99
RRI1	YDL216C	NOT5	Q12514	560 aa	Predicted RBP	2.64	□□□□□ -1.99
RRI1	YDL216C	TY3A-I	Q99219	290 aa		2.64	□□□□□ -1.99
RRI1	YDL216C	HIR3	P47171	1648 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	STH1	P32597	1359 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	COS2	P0CX12	379 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	COS3	P0CX13	379 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	DPB2	P24482	689 aa	Predicted RBP	2.63	□□□□□ -1.99
RRI1	YDL216C	PET100	P38958	111 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	PRM9	P39551	298 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	CDC14	Q00684	551 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	ATC1	Q04005	294 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	PLB3	Q08108	686 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	YOR268C	Q08734	132 aa		2.63	□□□□□ -1.99
RRI1	YDL216C	SPT6	P23615	1451 aa	Known RBP	2.62	□□□□□ -1.99
RRI1	YDL216C	RPL24A	P04449	155 aa	Known RBP	2.62	□□□□□ -1.99
RRI1	YDL216C	RAD10	P06838	210 aa		2.62	□□□□□ -1.99
RRI1	YDL216C	YGP1	P38616	354 aa	Known RBP	2.62	□□□□□ -1.99
RRI1	YDL216C	YHR045W	P38775	560 aa		2.62	□□□□□ -1.99
RRI1	YDL216C	RCY1	P39531	840 aa		2.62	□□□□□ -1.99
RRI1	YDL216C	DDI1	P40087	428 aa		2.62	□□□□□ -1.99
RRI1	YDL216C	BUD4	P47136	1447 aa		2.62	□□□□□ -1.99
RRI1	YDL216C	DSK2	P48510	373 aa		2.62	□□□□□ -1.99
RRI1	YDL216C	VPS68	Q12016	184 aa		2.62	□□□□□ -1.99
RRI1	YDL216C	BNI1	P41832	1953 aa		2.62	□□□□□ -1.99
RRI1	YDL216C	RPA190	P10964	1664 aa	Known RBP	2.61	□□□□□ -1.99
RRI1	YDL216C	ESC1	Q03661	1658 aa	Known RBP	2.61	□□□□□ -1.99
RRI1	YDL216C	MYO2	P19524	1574 aa	Known RBP	2.61	□□□□□ -1.99
RRI1	YDL216C	RAD3	P06839	778 aa		2.61	□□□□□ -1.99
RRI1	YDL216C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	2.61	□□□□□ -1.99	not detected
RRI1	YDL216C	COA1	P40452	197 aa		2.61	□□□□□ -1.99
RRI1	YDL216C	AAH1	P53909	347 aa		2.61	□□□□□ -1.99
RRI1	YDL216C	RDS3	Q06835	107 aa	Predicted RBP	2.61	□□□□□ -1.99
RRI1	YDL216C	YOR283W	Q12040	230 aa	Known RBP	2.61	□□□□□ -1.99
RRI1	YDL216C	YPL247C	Q12523	523 aa		2.61	□□□□□ -1.99
RRI1	YDL216C	YCF1	P39109	1515 aa	Known RBP	2.6	□□□□□ -1.99
RRI1	YDL216C	HIS1	P00498	297 aa	Known RBP	2.6	□□□□□ -1.99
RRI1	YDL216C	RNP1	P32385	249 aa		2.6	□□□□□ -1.99
RRI1	YDL216C	GDH2	P33327	1092 aa	Known RBP	2.6	□□□□□ -1.99
RRI1	YDL216C	YHL049C	P38722	271 aa		2.6	□□□□□ -1.99
RRI1	YDL216C	COG3	P40094	801 aa		2.6	□□□□□ -1.99
RRI1	YDL216C	YJL028W	P47062	111 aa		2.6	□□□□□ -1.99
RRI1	YDL216C	YMR114C	Q04471	368 aa	Known RBP	2.6	□□□□□ -1.99
RRI1	YDL216C	PEX10	Q05568	337 aa		2.6	□□□□□ -1.99
RRI1	YDL216C	SUE1	Q06524	206 aa		2.6	□□□□□ -1.99
RRI1	YDL216C	PST1	Q12355	444 aa		2.6	□□□□□ -1.99
RRI1	YDL216C	PPH21	P23594	369 aa		2.59	□□□□□ -2
RRI1	YDL216C	MAL32	P38158	584 aa		2.59	□□□□□ -2
RRI1	YDL216C	YJL016W	P47072	561 aa		2.59	□□□□□ -2
RRI1	YDL216C	MAL12	P53341	584 aa		2.59	□□□□□ -2
RRI1	YDL216C	OM45	P16547	393 aa		2.58	□□□□□ -2
RRI1	YDL216C	YJR012C	P47087	207 aa		2.58	□□□□□ -2
RRI1	YDL216C	YJR146W	P47174	117 aa		2.58	□□□□□ -2
RRI1	YDL216C	MAL13	P53338	473 aa		2.58	□□□□□ -2
RRI1	YDL216C	CGI121	Q03705	181 aa	Known RBP	2.58	□□□□□ -2
RRI1	YDL216C	BOP2	Q06150	570 aa		2.58	□□□□□ -2
RRI1	YDL216C	PEP1	P32319	1579 aa		2.58	□□□□□ -2
RRI1	YDL216C	CDC25	P04821	1589 aa		2.57	□□□□□ -2
RRI1	YDL216C	CWP1	P28319	239 aa		2.57	□□□□□ -2
RRI1	YDL216C	MRPL37	P36532	105 aa		2.57	□□□□□ -2
RRI1	YDL216C	RTT105	P40063	208 aa		2.57	□□□□□ -2
RRI1	YDL216C	TIF34	P40217	347 aa	Known RBP	2.57	□□□□□ -2
RRI1	YDL216C	DSN1	P40568	576 aa		2.57	□□□□□ -2
RRI1	YDL216C	MRPL49	P40858	161 aa	Predicted RBP	2.57	□□□□□ -2
RRI1	YDL216C	GON7	P46984	123 aa		2.57	□□□□□ -2
RRI1	YDL216C	SLD7	Q08457	257 aa		2.57	□□□□□ -2
RRI1	YDL216C	DNF1	P32660	1571 aa		2.56	□□□□□ -2
RRI1	YDL216C	COX2	P00410	251 aa		2.56	□□□□□ -2
RRI1	YDL216C	ECM13	P38195	257 aa		2.56	□□□□□ -2
RRI1	YDL216C	MDM34	P53083	459 aa		2.56	□□□□□ -2
RRI1	YDL216C	OST6	Q03723	332 aa		2.56	□□□□□ -2
RRI1	YDL216C	GEP5	Q12393	293 aa		2.56	□□□□□ -2
RRI1	YDL216C	DNF2	Q12675	1612 aa		2.55	□□□□□ -2
RRI1	YDL216C	SCO1	P23833	295 aa		2.55	□□□□□ -2
RRI1	YDL216C	YHL026C	P38740	315 aa		2.55	□□□□□ -2
RRI1	YDL216C	ALG11	P53954	548 aa	Known RBP	2.55	□□□□□ -2
RRI1	YDL216C	SLM2	P53955	656 aa		2.55	□□□□□ -2
RRI1	YDL216C	EMI1	Q04406	187 aa		2.55	□□□□□ -2
RRI1	YDL216C	SNF8	Q12483	233 aa		2.55	□□□□□ -2
RRI1	YDL216C	ATG2	P53855	1592 aa		2.55	□□□□□ -2
RRI1	YDL216C	YOR093C	Q12275	1648 aa		2.54	□□□□□ -2
RRI1	YDL216C	MRP1	P10662	321 aa	Known RBP	2.54	□□□□□ -2
RRI1	YDL216C	POX1	P13711	748 aa		2.54	□□□□□ -2
RRI1	YDL216C	RPL10	P41805	221 aa	Known RBP	2.54	□□□□□ -2
RRI1	YDL216C	YAR1	P46683	200 aa		2.54	□□□□□ -2
RRI1	YDL216C	GPI8	P49018	411 aa		2.54	□□□□□ -2
RRI1	YDL216C	CAB4	P53332	305 aa		2.54	□□□□□ -2
RRI1	YDL216C	COS6	P53344	381 aa		2.54	□□□□□ -2
RRI1	YDL216C	ASI3	P53983	676 aa		2.54	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 15 ms