RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 GDF3Q9NR23 364 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 CHORDC1Q9UHD1 332 aaPredicted RBP14.67□□□□□ -0.06
NEK3-205ENST00000610828 ADAM21Q9UKJ8 722 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 KRIT1O00522 736 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 KRT5P13647 590 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 AARSP49588 968 aaKnown RBP eCLIP14.67□□□□□ -0.06
NEK3-205ENST00000610828 CARSP49589 748 aaKnown RBP14.67□□□□□ -0.06
NEK3-205ENST00000610828 WDR78Q5VTH9 848 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 EMBQ6PCB8 327 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 METTL7BQ6UX53 244 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 SCFD2Q8WU76 684 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 PSPC1Q8WXF1 523 aaKnown RBP14.67□□□□□ -0.06
NEK3-205ENST00000610828 ZNF516Q92618 1163 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 AZI2Q9H6S1 392 aa14.67□□□□□ -0.06
NEK3-205ENST00000610828 ATMINO43313 823 aaPredicted RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 SLC25A27O95847 323 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 GZMAP12544 262 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 MARK3P27448 753 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 RFC5P40937 340 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 FMO1Q01740 532 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 Q3C1V9 767 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 RASGEF1CQ8N431 466 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 GLG1Q92896 1179 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 OPTNQ96CV9 577 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 CALR3Q96L12 384 aaKnown RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 MPHOSPH6Q99547 160 aaKnown RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 TARS2Q9BW92 718 aaKnown RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 HAPLN2Q9GZV7 340 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 C1orf112Q9NSG2 853 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 NFU1Q9UMS0 254 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 STYXL1Q9Y6J8 313 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 ZC3H4Q9UPT8 1303 aaKnown RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 GOLGA6BA6NDN3 693 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 ARIH2O95376 493 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 SYF2O95926 243 aaKnown RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 GGCXP38435 758 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 WNT7BP56706 349 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 ENPEPQ07075 957 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 PSMD6Q15008 389 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 TARBP2Q15633 366 aaKnown RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 RIN2Q8WYP3 895 aaPredicted RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 MSTO1Q9BUK6 570 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 DDX47Q9H0S4 455 aaKnown RBP14.66□□□□□ -0.06
NEK3-205ENST00000610828 RBPJLQ9UBG7 517 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 KCNH4Q9UQ05 1017 aa14.66□□□□□ -0.06
NEK3-205ENST00000610828 DDX3YO15523 660 aaKnown RBP14.65□□□□□ -0.06
NEK3-205ENST00000610828 SCP2P22307 547 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 CDR2Q01850 454 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 GCNT1Q02742 428 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 PPIL2Q13356 520 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 DRP2Q13474 957 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 BIRC3Q13489 604 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 CAPSQ13938 189 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 KCTD2Q14681 263 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 SLFN12LQ6IEE8 588 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 C15orf39Q6ZRI6 1047 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 AFAP1L1Q8TED9 768 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 RBAKQ9NYW8 714 aaPredicted RBP14.65□□□□□ -0.06
NEK3-205ENST00000610828 ALG6Q9Y672 507 aa14.65□□□□□ -0.06
NEK3-205ENST00000610828 TMEM110-MUSTN1A8MSY1 372 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 NOP56O00567 594 aaKnown RBP14.65□□□□□ -0.07
NEK3-205ENST00000610828 KIAA0391O15091 583 aaKnown RBP14.65□□□□□ -0.07
NEK3-205ENST00000610828 SART1O43290 800 aaKnown RBP14.65□□□□□ -0.07
NEK3-205ENST00000610828 RNF40O75150 1001 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 ZC3H11AO75152 810 aaKnown RBP eCLIP14.65□□□□□ -0.075e-6■■□□□ 12.3
NEK3-205ENST00000610828 FGGP02679 453 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 EDN1P05305 212 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 HARSP12081 509 aaKnown RBP14.65□□□□□ -0.07
NEK3-205ENST00000610828 ITGA4P13612 1032 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 YBX3P16989 372 aaKnown RBP eCLIP14.65□□□□□ -0.07
NEK3-205ENST00000610828 PIK3CAP42336 1068 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 HADHBP55084 474 aaKnown RBP14.65□□□□□ -0.07
NEK3-205ENST00000610828 CLDN10P78369 228 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 PAK2Q13177 524 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 HSDL1Q3SXM5 330 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 WDR44Q5JSH3 913 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 ZBTB41Q5SVQ8 909 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 DCAF12L1Q5VU92 463 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 DPY19L2Q6NUT2 758 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 CRELD2Q6UXH1 353 aaPredicted RBP14.65□□□□□ -0.07
NEK3-205ENST00000610828 ENOSF1Q7L5Y1 443 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 TRIM50Q86XT4 487 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 CASKIN2Q8WXE0 1202 aa14.65□□□□□ -0.07
NEK3-205ENST00000610828 PTPRJQ12913 1337 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 CCDC188H7C350 402 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 MAFO75444 373 aaPredicted RBP14.64□□□□□ -0.07
NEK3-205ENST00000610828 CLSTN1O94985 981 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 LDHAP00338 332 aaKnown RBP14.64□□□□□ -0.07
NEK3-205ENST00000610828 CALCAP01258 141 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 PIGRP01833 764 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 TRADDQ15628 312 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 ZACNQ401N2 412 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 TDRD10Q5VZ19 366 aaKnown RBP14.64□□□□□ -0.07
NEK3-205ENST00000610828 PRPF31Q8WWY3 499 aaKnown RBP14.64□□□□□ -0.07
NEK3-205ENST00000610828 CAVIN3Q969G5 261 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 MMP19Q99542 508 aa14.64□□□□□ -0.07
NEK3-205ENST00000610828 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.64□□□□□ -0.07
NEK3-205ENST00000610828 AGPSO00116 658 aa14.63□□□□□ -0.07
NEK3-205ENST00000610828 HLA-DRAP01903 254 aa14.63□□□□□ -0.07
NEK3-205ENST00000610828 CYP2C19P33261 490 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms