RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	UBAP2	Q5T6F2	1119 aa	Known RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CCDC80	Q76M96	950 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MAEA	Q7L5Y9	396 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	USP38	Q8NB14	1042 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MTMR14	Q8NCE2	650 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	U2AF1L4	Q8WU68	220 aa	Known RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ELMO3	Q96BJ8	720 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ASIC4	Q96FT7	647 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TEPSIN	Q96N21	525 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CCT8L2	Q96SF2	557 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GAN	Q9H2C0	597 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GDF3	Q9NR23	364 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZHX2	Q9Y6X8	837 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZNF646	O15015	1829 aa	Predicted RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	KIF13B	Q9NQT8	1826 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PJA2	O43164	708 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SART1	O43290	800 aa	Known RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CCDC159	P0C7I6	412 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RPS12	P25398	132 aa	Known RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CCNH	P51946	323 aa	Predicted RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ADCY1	Q08828	1119 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	QPCT	Q16769	361 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	C10orf76	Q5T2E6	689 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	FKBP1C	Q5VVH2	108 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ALS2CL	Q60I27	953 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PPP1R18	Q6NYC8	613 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NPAS4	Q8IUM7	802 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	METTL13	Q8N6R0	699 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZNF473	Q8WTR7	871 aa	Known RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CHURC1	Q8WUH1	139 aa		12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.45	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	FOCAD	Q5VW36	1801 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RASA4B	C9J798	803 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	KRIT1	O00522	736 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	FOXD2	O60548	495 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZNF189	O75820	626 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PRLR	P16471	622 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PPP1R2	P41236	205 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZNF280A	P59817	542 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ORC2	Q13416	577 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	UAP1	Q16222	522 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	DPY19L2P1	Q6NXN4	242 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ALKBH5	Q6P6C2	394 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	DAAM2	Q86T65	1068 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZBED3	Q96IU2	234 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RSRC1	Q96IZ7	334 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TCHP	Q9BT92	498 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	WDR18	Q9BV38	432 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	WRAP73	Q9P2S5	460 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NOVA2	Q9UNW9	492 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SIPA1L1	O43166	1804 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PHF20L1	A8MW92	1017 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	DDX39A	O00148	427 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SNUPN	O95149	360 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GCNT3	O95395	438 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ALAS1	P13196	640 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SNX16	P57768	344 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ACTN3	Q08043	901 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MYBPC3	Q14896	1274 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	HYI	Q5T013	277 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CRYGN	Q8WXF5	182 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CAVIN3	Q969G5	261 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ATP6V1G3	Q96LB4	118 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CCDC68	Q9H2F9	335 aa		12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CNOT8	Q9UFF9	292 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SSU72P8	A0A1W2PR75	194 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TISP43	B9A030	160 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	UCHL3	P15374	230 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	HIRA	P54198	1017 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NLRP14	Q86W24	1093 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TPH2	Q8IWU9	490 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TMCO5A	Q8N6Q1	288 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	JPH2	Q9BR39	696 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SYT17	Q9BSW7	474 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NT5C3A	Q9H0P0	336 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RAVER2	Q9HCJ3	691 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GPRC5D	Q9NZD1	345 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	XPO7	Q9UIA9	1087 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CCPG1	Q9ULG6	757 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NOC2L	Q9Y3T9	749 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ASTN1	O14525	1302 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	HGS	O14964	777 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PPP1R37	O75864	691 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	HARS	P12081	509 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GLUL	P15104	373 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	EIF4B	P23588	611 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	HOXD11	P31277	338 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	HMGCS2	P54868	508 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	DHX9	Q08211	1270 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	DMPK	Q09013	629 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PTGIS	Q16647	500 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MMS22L	Q6ZRQ5	1243 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PEX26	Q7Z412	305 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	LDHD	Q86WU2	507 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MYCBPAP	Q8TBZ2	947 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GLG1	Q92896	1179 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	DYDC2	Q96IM9	177 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	EIF2AK1	Q9BQI3	630 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	DNAI2	Q9GZS0	605 aa		12.43	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms