RNA–Protein interactions for RNA: ENST00000541280.1

SUDS3-202, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

TSL 5

Gene SUDS3, Length 659 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-202ENST00000541280 RCAN3Q9UKA8 241 aa6.97□□□□□ -1.29
SUDS3-202ENST00000541280 WASF3Q9UPY6 502 aa6.97□□□□□ -1.29
SUDS3-202ENST00000541280 NOP58Q9Y2X3 529 aaKnown RBP6.97□□□□□ -1.29
SUDS3-202ENST00000541280 TIAM2Q8IVF5 1701 aa6.96□□□□□ -1.29
SUDS3-202ENST00000541280 DDX60Q8IY21 1712 aaKnown RBP6.96□□□□□ -1.29
SUDS3-202ENST00000541280 A0A1B0GUL7 405 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 DDX3XO00571 662 aaKnown RBP eCLIP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 PRODHO43272 600 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 SURF6O75683 361 aaKnown RBP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 LDHCP07864 332 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 GRK2P25098 689 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 GRK3P35626 688 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 TIMM10P62072 90 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 GSTO1P78417 241 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 SREBF2Q12772 1141 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 TFCP2Q12800 502 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 GRM1Q13255 1194 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 OS9Q13438 667 aaPredicted RBP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 RASA3Q14644 834 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 MCTP2Q6DN12 878 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 OTOP3Q7RTS5 596 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 FAM124AQ86V42 546 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 PROSER1Q86XN7 944 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 ANKRD13AQ8IZ07 590 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 TTC9BQ8N6N2 239 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 UHMK1Q8TAS1 419 aaKnown RBP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 PIP4K2CQ8TBX8 421 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 MBD6Q96DN6 1003 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 LCORQ96JN0 433 aaPredicted RBP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 NEUROD6Q96NK8 337 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 VEZTQ9HBM0 779 aa6.96□□□□□ -1.3
SUDS3-202ENST00000541280 PA2G4Q9UQ80 394 aaKnown RBP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 COL1A1P02452 1464 aaPredicted RBP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 ASTN2O75129 1339 aaPredicted RBP6.96□□□□□ -1.3
SUDS3-202ENST00000541280 TRAV20A0A0B4J274 112 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 PNMA6EA0A0J9YXQ4 647 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 CLRN2A0PK11 232 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 MANSC4A6NHS7 340 aaPredicted RBP6.95□□□□□ -1.3
SUDS3-202ENST00000541280 UBE2Q2LH0YL09 131 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 FOXN1O15353 648 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 MAGEA10P43363 369 aaPredicted RBP6.95□□□□□ -1.3
SUDS3-202ENST00000541280 TM4SF4P48230 202 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 GPR85P60893 370 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 KIF23Q02241 960 aaPredicted RBP6.95□□□□□ -1.3
SUDS3-202ENST00000541280 OTUD7BQ6GQQ9 843 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 APOBEC3HQ6NTF7 200 aaKnown RBP6.95□□□□□ -1.3
SUDS3-202ENST00000541280 PKN3Q6P5Z2 889 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 NSMFQ6X4W1 530 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 SSBP3Q9BWW4 388 aaPredicted RBP6.95□□□□□ -1.3
SUDS3-202ENST00000541280 JAM3Q9BX67 310 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 TDRD3Q9H7E2 651 aaKnown RBP6.95□□□□□ -1.3
SUDS3-202ENST00000541280 INVSQ9Y283 1065 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 DICER1Q9UPY3 1922 aaKnown RBP6.95□□□□□ -1.3
SUDS3-202ENST00000541280 ADAMTSL1Q8N6G6 1762 aa6.95□□□□□ -1.3
SUDS3-202ENST00000541280 RAB11FIP3O75154 756 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 ZBTB48P10074 688 aaPredicted RBP6.94□□□□□ -1.3
SUDS3-202ENST00000541280 HSPA8P11142 646 aaKnown RBP6.94□□□□□ -1.3
SUDS3-202ENST00000541280 PHKA1P46020 1223 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 LBX1P52954 281 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 MLLT6P55198 1093 aaPredicted RBP6.94□□□□□ -1.3
SUDS3-202ENST00000541280 DLK2Q6UY11 383 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 DPH6Q7L8W6 267 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 RASAL3Q86YV0 1011 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 CERS3Q8IU89 383 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 SPATA5Q8NB90 893 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 FAM151AQ8WW52 585 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 ZCCHC14Q8WYQ9 949 aaKnown RBP6.94□□□□□ -1.3
SUDS3-202ENST00000541280 SAMD11Q96NU1 681 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 ZBTB40Q9NUA8 1239 aa6.94□□□□□ -1.3
SUDS3-202ENST00000541280 COL4A1P02462 1669 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 LTBP1Q14766 1721 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 LAMB2P55268 1798 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 TCP10L2B9ZVM9 353 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 ENTPD3O75355 529 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 WDHD1O75717 1129 aaPredicted RBP6.93□□□□□ -1.3
SUDS3-202ENST00000541280 BAG3O95817 575 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 COL6A1P12109 1028 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 EPHA5P54756 1037 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 RASGRF1Q13972 1273 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 SURF1Q15526 300 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 TTC39AQ5SRH9 613 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 PRAMEF18Q5VWM3 479 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 CEP85Q6P2H3 762 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 KCNT2Q6UVM3 1135 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 PLEKHH3Q7Z736 793 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 DZIP1Q86YF9 867 aaKnown RBP6.93□□□□□ -1.3
SUDS3-202ENST00000541280 IFNL3Q8IZI9 196 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 CLASRPQ8N2M8 674 aaKnown RBP6.93□□□□□ -1.3
SUDS3-202ENST00000541280 DTX3Q8N9I9 347 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 CLEC4DQ8WXI8 215 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 KIF1BPQ96EK5 621 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 ZSWIM3Q96MP5 696 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 NOL10Q9BSC4 688 aaKnown RBP6.93□□□□□ -1.3
SUDS3-202ENST00000541280 SPATA9Q9BWV2 254 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 IDI2Q9BXS1 227 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 KRTAP3-1Q9BYR8 98 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 TRIM55Q9BYV6 548 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 DLL4Q9NR61 685 aa6.93□□□□□ -1.3
SUDS3-202ENST00000541280 RNF186Q9NXI6 227 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms