RNA–Protein interactions for RNA: ENST00000541280.1

SUDS3-202, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

TSL 5

Gene SUDS3, Length 659 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-202ENST00000541280 AEBP2Q6ZN18 517 aaPredicted RBP29.3■■■□□ 2.28
SUDS3-202ENST00000541280 CHIC1Q5VXU3 224 aa28.23■■■□□ 2.11
SUDS3-202ENST00000541280 SENP3Q9H4L4 574 aaPredicted RBP24.96■■□□□ 1.59
SUDS3-202ENST00000541280 PHF23Q9BUL5 403 aaPredicted RBP24.77■■□□□ 1.56
SUDS3-202ENST00000541280 FOXD1Q16676 465 aa23.18■■□□□ 1.3
SUDS3-202ENST00000541280 PLPPR3Q6T4P5 718 aa22.72■■□□□ 1.23
SUDS3-202ENST00000541280 PPP6R1Q9UPN7 881 aa21.95■■□□□ 1.1
SUDS3-202ENST00000541280 ADRA2BP18089 450 aa21.88■■□□□ 1.09
SUDS3-202ENST00000541280 PIAS4Q8N2W9 510 aaPredicted RBP21.73■■□□□ 1.07
SUDS3-202ENST00000541280 MSH5O43196 834 aa21.59■■□□□ 1.05
SUDS3-202ENST00000541280 POTEDQ86YR6 584 aa20.37■□□□□ 0.85
SUDS3-202ENST00000541280 SCAF1Q9H7N4 1312 aaKnown RBP20.07■□□□□ 0.8
SUDS3-202ENST00000541280 MAPK8IP2Q13387 824 aaPredicted RBP19.96■□□□□ 0.79
SUDS3-202ENST00000541280 PPP4R3CPQ6ZMV5 832 aa19.94■□□□□ 0.78
SUDS3-202ENST00000541280 DMRT2Q9Y5R5 561 aa19.87■□□□□ 0.77
SUDS3-202ENST00000541280 CNKSR2Q8WXI2 1034 aa19.51■□□□□ 0.71
SUDS3-202ENST00000541280 HOXD11P31277 338 aaPredicted RBP19.31■□□□□ 0.68
SUDS3-202ENST00000541280 NCBP3Q53F19 620 aaKnown RBP19.3■□□□□ 0.68
SUDS3-202ENST00000541280 RNF216Q9NWF9 866 aaPredicted RBP19.25■□□□□ 0.67
SUDS3-202ENST00000541280 NPM3O75607 178 aaKnown RBP19.02■□□□□ 0.64
SUDS3-202ENST00000541280 KCNA4P22459 653 aa18.97■□□□□ 0.63
SUDS3-202ENST00000541280 DCAF8L1A6NGE4 600 aa18.86■□□□□ 0.61
SUDS3-202ENST00000541280 DNAJC5BQ9UF47 199 aa18.71■□□□□ 0.59
SUDS3-202ENST00000541280 RNF39Q9H2S5 420 aa18.46■□□□□ 0.55
SUDS3-202ENST00000541280 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.29■□□□□ 0.522e-7■■□□□ 13.6
SUDS3-202ENST00000541280 C1QBPQ07021 282 aaKnown RBP18.21■□□□□ 0.51
SUDS3-202ENST00000541280 CACNB1Q02641 598 aaPredicted RBP18.2■□□□□ 0.5
SUDS3-202ENST00000541280 SLC4A2P04920 1241 aa18.08■□□□□ 0.48
SUDS3-202ENST00000541280 U3KPZ7 1027 aaPredicted RBP18.01■□□□□ 0.47
SUDS3-202ENST00000541280 SLC4A1APQ9BWU0 796 aaKnown RBP17.99■□□□□ 0.47
SUDS3-202ENST00000541280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.65■□□□□ 0.42
SUDS3-202ENST00000541280 HNRNPUL2Q1KMD3 747 aaKnown RBP17.65■□□□□ 0.42
SUDS3-202ENST00000541280 FOXD4L1Q9NU39 408 aa17.62■□□□□ 0.41
SUDS3-202ENST00000541280 MYCNP04198 464 aaPredicted RBP17.61■□□□□ 0.41
SUDS3-202ENST00000541280 SPINK5Q9NQ38 1064 aaPredicted RBP17.58■□□□□ 0.4
SUDS3-202ENST00000541280 APLP2Q06481 763 aa17.57■□□□□ 0.4
SUDS3-202ENST00000541280 SAMD1Q6SPF0 538 aaPredicted RBP17.56■□□□□ 0.4
SUDS3-202ENST00000541280 CAPN15O75808 1086 aa17.5■□□□□ 0.39
SUDS3-202ENST00000541280 ZBTB22O15209 634 aa17.47■□□□□ 0.39
SUDS3-202ENST00000541280 DSG3P32926 999 aa17.39■□□□□ 0.37
SUDS3-202ENST00000541280 ZNF219Q9P2Y4 722 aaPredicted RBP17.39■□□□□ 0.37
SUDS3-202ENST00000541280 TRHP20396 242 aaPredicted RBP17.31■□□□□ 0.36
SUDS3-202ENST00000541280 ABCB7O75027 752 aa17.12■□□□□ 0.33
SUDS3-202ENST00000541280 ATF5Q9Y2D1 282 aaPredicted RBP17.12■□□□□ 0.33
SUDS3-202ENST00000541280 ATXN8OSP0DMR3 200 aa17.11■□□□□ 0.33
SUDS3-202ENST00000541280 CSRNP3Q8WYN3 585 aa17■□□□□ 0.31
SUDS3-202ENST00000541280 POLA2Q14181 598 aa16.97■□□□□ 0.31
SUDS3-202ENST00000541280 EHMT2Q96KQ7 1210 aa16.89■□□□□ 0.29
SUDS3-202ENST00000541280 ZBTB12Q9Y330 459 aaPredicted RBP16.73■□□□□ 0.27
SUDS3-202ENST00000541280 RBM42Q9BTD8 480 aaKnown RBP16.6■□□□□ 0.25
SUDS3-202ENST00000541280 FBLN2P98095 1184 aa16.43■□□□□ 0.22
SUDS3-202ENST00000541280 OSCARQ8IYS5 282 aa16.41■□□□□ 0.22
SUDS3-202ENST00000541280 MKRN4PQ13434 485 aaPredicted RBP16.38■□□□□ 0.21
SUDS3-202ENST00000541280 AKT1S1Q96B36 256 aa16.31■□□□□ 0.2
SUDS3-202ENST00000541280 SPDYE2BA6NHP3 402 aa16.24■□□□□ 0.19
SUDS3-202ENST00000541280 SPDYE6P0CI01 402 aa16.24■□□□□ 0.19
SUDS3-202ENST00000541280 SPDYE2Q495Y8 402 aa16.24■□□□□ 0.19
SUDS3-202ENST00000541280 REM2Q8IYK8 340 aaPredicted RBP16.11■□□□□ 0.17
SUDS3-202ENST00000541280 SSUH2Q9Y2M2 353 aa16.09■□□□□ 0.17
SUDS3-202ENST00000541280 CHRDL2Q6WN34 429 aa16.05■□□□□ 0.16
SUDS3-202ENST00000541280 ZNF692Q9BU19 519 aaPredicted RBP16.04■□□□□ 0.16
SUDS3-202ENST00000541280 POTEHQ6S545 545 aa16.03■□□□□ 0.16
SUDS3-202ENST00000541280 PITPNM1O00562 1244 aa15.94■□□□□ 0.14
SUDS3-202ENST00000541280 SPDYE1Q8NFV5 336 aaPredicted RBP15.84■□□□□ 0.13
SUDS3-202ENST00000541280 PABPN1Q86U42 306 aaKnown RBP eCLIP15.81■□□□□ 0.12
SUDS3-202ENST00000541280 SPDYE4A6NLX3 237 aa15.78■□□□□ 0.12
SUDS3-202ENST00000541280 FXR2P51116 673 aaKnown RBP eCLIP15.77■□□□□ 0.12
SUDS3-202ENST00000541280 PIP4P2Q8N4L2 257 aa15.76■□□□□ 0.11
SUDS3-202ENST00000541280 CLEC11AQ9Y240 323 aa15.69■□□□□ 0.1
SUDS3-202ENST00000541280 PROM2Q8N271 834 aa15.58■□□□□ 0.08
SUDS3-202ENST00000541280 PRR29P0C7W0 189 aa15.54■□□□□ 0.08
SUDS3-202ENST00000541280 STAG3Q9UJ98 1225 aa15.52■□□□□ 0.08
SUDS3-202ENST00000541280 PRKAR2AP13861 404 aaKnown RBP15.5■□□□□ 0.07
SUDS3-202ENST00000541280 CHADLQ6NUI6 762 aa15.37■□□□□ 0.05
SUDS3-202ENST00000541280 FKBP8Q14318 412 aa15.35■□□□□ 0.05
SUDS3-202ENST00000541280 HAX1O00165 279 aa15.3■□□□□ 0.04
SUDS3-202ENST00000541280 CREBZFQ9NS37 354 aa15.29■□□□□ 0.04
SUDS3-202ENST00000541280 C19orf67A6NJJ6 358 aa15.25■□□□□ 0.03
SUDS3-202ENST00000541280 FARP1Q9Y4F1 1045 aaPredicted RBP15.25■□□□□ 0.03
SUDS3-202ENST00000541280 SP7Q8TDD2 431 aaPredicted RBP15.23■□□□□ 0.03
SUDS3-202ENST00000541280 EVX2Q03828 476 aa15.17■□□□□ 0.02
SUDS3-202ENST00000541280 MNX1P50219 401 aaPredicted RBP15.12■□□□□ 0.01
SUDS3-202ENST00000541280 CD44P16070 742 aaKnown RBP15.04■□□□□ -0
SUDS3-202ENST00000541280 NPM1P06748 294 aaKnown RBP eCLIP15.01□□□□□ -0.01
SUDS3-202ENST00000541280 FBXO3Q9UK99 471 aa14.98□□□□□ -0.01
SUDS3-202ENST00000541280 MIER1Q8N108 512 aa14.96□□□□□ -0.01
SUDS3-202ENST00000541280 PLEKHG5O94827 1062 aa14.94□□□□□ -0.02
SUDS3-202ENST00000541280 PLCD3Q8N3E9 789 aa14.89□□□□□ -0.03
SUDS3-202ENST00000541280 ZNF579Q8NAF0 562 aaKnown RBP14.89□□□□□ -0.03
SUDS3-202ENST00000541280 CLCN6P51797 869 aa14.88□□□□□ -0.03
SUDS3-202ENST00000541280 GABBR2O75899 941 aa14.87□□□□□ -0.03
SUDS3-202ENST00000541280 ZRANB1Q9UGI0 708 aa14.86□□□□□ -0.03
SUDS3-202ENST00000541280 PAK3O75914 559 aaPredicted RBP14.84□□□□□ -0.03
SUDS3-202ENST00000541280 ZBTB47Q9UFB7 747 aaPredicted RBP14.84□□□□□ -0.03
SUDS3-202ENST00000541280 VASPP50552 380 aaPredicted RBP14.78□□□□□ -0.04
SUDS3-202ENST00000541280 RASEFQ8IZ41 740 aa14.72□□□□□ -0.05
SUDS3-202ENST00000541280 NUBP1P53384 320 aa14.71□□□□□ -0.05
SUDS3-202ENST00000541280 PHF12Q96QT6 1004 aa14.7□□□□□ -0.06
SUDS3-202ENST00000541280 CCDC61Q9Y6R9 512 aa14.69□□□□□ -0.06
SUDS3-202ENST00000541280 TSPYL2Q9H2G4 693 aaPredicted RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms