RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 RNF180Q86T96 592 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 TRIM74Q86UV6 250 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 TRIM73Q86UV7 250 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 FERMT3Q86UX7 667 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 LDHDQ86WU2 507 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 NME9Q86XW9 330 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 FMNL3Q8IVF7 1028 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 FAM126BQ8IXS8 530 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 ZZZ3Q8IYH5 903 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 C7orf31Q8N865 590 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 DRAXINQ8NBI3 349 aaPredicted RBP3.56□□□□□ -1.84
CSDE1-216ENST00000534389 CCDC150Q8NCX0 1101 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 SMARCC2Q8TAQ2 1214 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 CALML6Q8TD86 181 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 AFAP1L1Q8TED9 768 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 LMBR1Q8WVP7 490 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 CLEC4DQ8WXI8 215 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 RIN2Q8WYP3 895 aaPredicted RBP3.56□□□□□ -1.84
CSDE1-216ENST00000534389 TBC1D5Q92609 795 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 FAM84AQ96KN4 292 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 TUBGCP5Q96RT8 1024 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 SH3GL3Q99963 347 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 THUMPD2Q9BTF0 503 aaKnown RBP3.56□□□□□ -1.84
CSDE1-216ENST00000534389 TRIM6Q9C030 488 aaPredicted RBP3.56□□□□□ -1.84
CSDE1-216ENST00000534389 XPO4Q9C0E2 1151 aaKnown RBP3.56□□□□□ -1.84
CSDE1-216ENST00000534389 MCOLN1Q9GZU1 580 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 LSG1Q9H089 658 aaKnown RBP3.56□□□□□ -1.84
CSDE1-216ENST00000534389 SLC12A5Q9H2X9 1139 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 CDIP1Q9H305 208 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 SLC39A2Q9NP94 309 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 HOMER2Q9NSB8 354 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 INTS13Q9NVM9 706 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 OXSMQ9NWU1 459 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 HYPKQ9NX55 129 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 IFNKQ9P0W0 207 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 CROTQ9UKG9 612 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 CNOT6Q9ULM6 557 aaKnown RBP3.56□□□□□ -1.84
CSDE1-216ENST00000534389 LIMCH1Q9UPQ0 1083 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 TUBGCP6Q96RT7 1819 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 CDC42BPAQ5VT25 1732 aa3.56□□□□□ -1.84
CSDE1-216ENST00000534389 UGGT1Q9NYU2 1555 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 HMGXB3Q12766 1538 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 URB2Q14146 1524 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 LMTK2Q8IWU2 1503 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 NRXN1Q9ULB1 1477 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 PTPRTO14522 1441 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 TROQ12816 1431 aaPredicted RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 SSH2Q76I76 1423 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 KIF24Q5T7B8 1368 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 NEDD4P46934 1319 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 EVC2Q86UK5 1308 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 A0A1B0GVG6 124 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 TCRBV5S4A2TA0A5A2 114 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 VPS37CA5D8V6 355 aaPredicted RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ENO4A6NNW6 628 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ALG1L2C9J202 215 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 TMEM232C9JQI7 657 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 TRAF5O00463 557 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 IKBKBO14920 756 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 N4BP3O15049 544 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 CLASP2O75122 1294 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 MMEP08473 750 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ATP2A2P16615 1042 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 FAHP16930 419 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 KCNA6P17658 529 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 CD40P25942 277 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 CALRP27797 417 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 LSP1P33241 339 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 NF2P35240 595 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 MC3RP41968 323 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 LIMS1P48059 325 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 GLRBP48167 497 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 LSSP48449 732 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 GUCY2FP51841 1108 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 GNG11P61952 73 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 DLG4P78352 724 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 KRT85P78386 507 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ITKQ08881 620 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 SMAD4Q13485 552 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 KCNB1Q14721 858 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 SEPT7Q16181 437 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 STX1AQ16623 288 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 PRAMEF9Q5VWM5 478 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 RNF219Q5W0B1 726 aaPredicted RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 CNKSR3Q6P9H4 555 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 CASC1Q6TDU7 716 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 TEPPQ6URK8 271 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ATG14Q6ZNE5 492 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 TOGARAM2Q6ZUX3 1019 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 SRGAP1Q7Z6B7 1085 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 STK32CQ86UX6 486 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 DDX42Q86XP3 938 aaKnown RBP eCLIP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 SPATS2Q86XZ4 545 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 MAB21L3Q8N8X9 362 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 C8orf58Q8NAV2 365 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 NOA1Q8NC60 698 aaKnown RBP3.55□□□□□ -1.84
CSDE1-216ENST00000534389 ENGASEQ8NFI3 743 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 OR8K1Q8NGG5 319 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 BICD2Q8TD16 824 aa3.55□□□□□ -1.84
CSDE1-216ENST00000534389 GOLGA1Q92805 767 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms