RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MAPK6Q16659 721 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 ZACNQ401N2 412 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 GLYCTKQ8IVS8 523 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 FAM71AQ8IYT1 594 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 SHC3Q92529 594 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 RBAKQ9NYW8 714 aaPredicted RBP22.38■■□□□ 1.17
VPS28-209ENST00000528142 CNTNAP2Q9UHC6 1331 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 CLDN3O15551 220 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 SRGAP2O75044 1071 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 ZNF286BP0CG31 522 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 PRLRP16471 622 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 MFAP3P55082 362 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 MAP2K5Q13163 448 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 TAF1CQ15572 869 aaPredicted RBP22.37■■□□□ 1.17
VPS28-209ENST00000528142 PPM1KQ8N3J5 372 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 U2AF1L4Q8WU68 220 aaKnown RBP22.37■■□□□ 1.17
VPS28-209ENST00000528142 GOLGA1Q92805 767 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 FAM84AQ96KN4 292 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 NT5C1BQ96P26 610 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 FNBP1Q96RU3 617 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 FZD8Q9H461 694 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 ZHX1Q9UKY1 873 aaPredicted RBP22.37■■□□□ 1.17
VPS28-209ENST00000528142 PCDHGC5Q9Y5F6 944 aa22.37■■□□□ 1.17
VPS28-209ENST00000528142 ZC3H11AO75152 810 aaKnown RBP eCLIP22.36■■□□□ 1.177e-6■■■■■ 33.7
VPS28-209ENST00000528142 MATR3P43243 847 aaKnown RBP eCLIP22.36■■□□□ 1.17
VPS28-209ENST00000528142 TM4SF4P48230 202 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 PTENP60484 403 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 C17orf99Q6UX52 265 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 DNAAF5Q86Y56 855 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 METTL13Q8N6R0 699 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.36■■□□□ 1.171e-6■■■■■ 37.9
VPS28-209ENST00000528142 SNX12Q9UMY4 172 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 PTPRJQ12913 1337 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 COL1A2P08123 1366 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 MAGEB2O15479 319 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 ADCY6O43306 1168 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 AOC2O75106 756 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 MMP3P08254 477 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 H2AFZP0C0S5 128 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 IGBP1P78318 339 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 POU5F1BQ06416 359 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 LMBRD2Q68DH5 695 aaPredicted RBP22.36■■□□□ 1.17
VPS28-209ENST00000528142 H2AFVQ71UI9 128 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 RABGGTAQ92696 567 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 TATDN2Q93075 761 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 NLRP4Q96MN2 994 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 AGPAT1Q99943 283 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 NFKBIZQ9BYH8 718 aa22.36■■□□□ 1.17
VPS28-209ENST00000528142 H3BRB1 525 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 ACKR2O00590 384 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 HOXC6P09630 235 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 TNNI1P19237 187 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 TNFAIP3P21580 790 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 PROZP22891 400 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 NAP1L1P55209 391 aaKnown RBP22.35■■□□□ 1.17
VPS28-209ENST00000528142 INHBEP58166 350 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 MCL1Q07820 350 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 IRF5Q13568 498 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 TEX35Q5T0J7 233 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 TDRD10Q5VZ19 366 aaKnown RBP22.35■■□□□ 1.17
VPS28-209ENST00000528142 TSHZ1Q6ZSZ6 1077 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 OR6J1Q8NGC5 347 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 USP6NLQ92738 828 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 CGRRF1Q99675 332 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 TUT1Q9H6E5 874 aaKnown RBP22.35■■□□□ 1.17
VPS28-209ENST00000528142 PTPRHQ9HD43 1115 aa22.35■■□□□ 1.17
VPS28-209ENST00000528142 PALMO75781 387 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 ECM2O94769 699 aaPredicted RBP22.34■■□□□ 1.17
VPS28-209ENST00000528142 MBTD1Q05BQ5 628 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 SEZ6Q53EL9 994 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 PAXIP1Q6ZW49 1069 aaPredicted RBP22.34■■□□□ 1.17
VPS28-209ENST00000528142 MTERF4Q7Z6M4 381 aaKnown RBP22.34■■□□□ 1.17
VPS28-209ENST00000528142 BRSK2Q8IWQ3 736 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 PDCL2Q8N4E4 241 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 SLC20A1Q8WUM9 679 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 ZNF668Q96K58 619 aaPredicted RBP22.34■■□□□ 1.17
VPS28-209ENST00000528142 TLR10Q9BXR5 811 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 FLRT1Q9NZU1 646 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 A0A0A6YYK5 440 aaPredicted RBP22.34■■□□□ 1.17
VPS28-209ENST00000528142 CTAGE15A4D2H0 777 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 VNN1O95497 513 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 CTAGE8P0CG41 777 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 H2AFXP16104 143 aaPredicted RBP22.34■■□□□ 1.17
VPS28-209ENST00000528142 GALCP54803 685 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 GCNT1Q02742 428 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 CRHR2Q13324 411 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 ZBTB33Q86T24 672 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 CTAGE6Q86UF2 777 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 CTAGE4Q8IX94 777 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 PI4K2AQ9BTU6 479 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 MINDY3Q9H8M7 445 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 IFT122Q9HBG6 1241 aa22.34■■□□□ 1.17
VPS28-209ENST00000528142 NOCTQ9UK39 431 aaKnown RBP22.34■■□□□ 1.17
VPS28-209ENST00000528142 GRID2IPA4D2P6 1211 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 SGPL1O95470 568 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 HLA-DRAP01903 254 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 HARSP12081 509 aaKnown RBP22.33■■□□□ 1.16
VPS28-209ENST00000528142 TNFSF9P41273 254 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 TUBB4BP68371 445 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 TNFAIP2Q03169 654 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms