RNA–Protein interactions for RNA: ENST00000524481.5

PTPRK-216, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 3,157 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-216ENST00000524481 DNAJC21Q5F1R6 531 aaKnown RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 PAPD7Q5XG87 772 aaKnown RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 NOP9Q86U38 636 aaKnown RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 SAMD3Q8N6K7 520 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 RDM1Q8NG50 284 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 SCFD2Q8WU76 684 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 ZC3H15Q8WU90 426 aaKnown RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 ZNF653Q96CK0 615 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 SENP7Q9BQF6 1050 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 FDXACB1Q9BRP7 624 aaPredicted RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 IMPG2Q9BZV3 1241 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 MTMR12Q9C0I1 747 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 DDX47Q9H0S4 455 aaKnown RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 PIK3R2O00459 728 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 STAM2O75886 525 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 GJB6O95452 261 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 CST3P01034 146 aaPredicted RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 CETPP11597 493 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 TRADDQ15628 312 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 KIZQ2M2Z5 673 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 ZNF771Q7L3S4 317 aaPredicted RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 RIN2Q8WYP3 895 aaPredicted RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 SYN2Q92777 582 aaPredicted RBP12.66□□□□□ -0.38
PTPRK-216ENST00000524481 HAPLN2Q9GZV7 340 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 SETD4Q9NVD3 440 aa12.66□□□□□ -0.38
PTPRK-216ENST00000524481 TMOD1P28289 359 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 SND1Q7KZF4 910 aaKnown RBP eCLIP12.65□□□□□ -0.38
PTPRK-216ENST00000524481 EPB41L5Q9HCM4 733 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 OGFRQ9NZT2 677 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 AMFRQ9UKV5 643 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 NFASCO94856 1347 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 PTPRJQ12913 1337 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 MYPNQ86TC9 1320 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 N4BP1O75113 896 aaKnown RBP12.65□□□□□ -0.38
PTPRK-216ENST00000524481 TMEM191BP0C7N4 346 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 EEF1DP3Q658K8 133 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 ZC3H3Q8IXZ2 948 aaKnown RBP12.65□□□□□ -0.38
PTPRK-216ENST00000524481 TMEM192Q8IY95 271 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 STRA6Q9BX79 667 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 MROH8Q9H579 483 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 DHX33Q9H6R0 707 aaKnown RBP12.65□□□□□ -0.38
PTPRK-216ENST00000524481 TMEM8AQ9HCN3 771 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 UMODL1Q5DID0 1318 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 ATAD5Q96QE3 1844 aa12.65□□□□□ -0.38
PTPRK-216ENST00000524481 KRIT1O00522 736 aa12.65□□□□□ -0.39
PTPRK-216ENST00000524481 GRIN3BO60391 1043 aa12.65□□□□□ -0.39
PTPRK-216ENST00000524481 MYBL2P10244 700 aa12.65□□□□□ -0.39
PTPRK-216ENST00000524481 TGFB3P10600 412 aa12.65□□□□□ -0.39
PTPRK-216ENST00000524481 TAF1CQ15572 869 aaPredicted RBP12.65□□□□□ -0.39
PTPRK-216ENST00000524481 DDX42Q86XP3 938 aaKnown RBP eCLIP12.65□□□□□ -0.39
PTPRK-216ENST00000524481 PCDHB18PQ96TA0 734 aa12.65□□□□□ -0.39
PTPRK-216ENST00000524481 DPH5Q9H2P9 285 aa12.65□□□□□ -0.39
PTPRK-216ENST00000524481 MINDY3Q9H8M7 445 aa12.65□□□□□ -0.39
PTPRK-216ENST00000524481 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.65□□□□□ -0.39
PTPRK-216ENST00000524481 RGPD3A6NKT7 1758 aaPredicted RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 RGPD4Q7Z3J3 1758 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 ZNF646O15015 1829 aaPredicted RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 THAP12O43422 761 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 NAMPTP43490 491 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 GHRHRQ02643 423 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 IFI16Q16666 785 aaKnown RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 HSP90B2PQ58FF3 399 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 SESTD1Q86VW0 696 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 SLC9A9Q8IVB4 645 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 TPCN2Q8NHX9 752 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 LMO3Q8TAP4 145 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 SMARCAD1Q9H4L7 1026 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 ARHGAP28Q9P2N2 729 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 ABT1Q9ULW3 272 aaKnown RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 UBE4BO95155 1302 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 H3BRB1 525 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 SOCS7O14512 581 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 EXTL3O43909 919 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 FGGP02679 453 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 CFHP08603 1231 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 ITGA4P13612 1032 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 CYP11B1P15538 503 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 JAM2P57087 298 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 BEX3Q00994 111 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 SMC1AQ14683 1233 aaKnown RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 TDRD10Q5VZ19 366 aaKnown RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 DPY19L2P1Q6NXN4 242 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 RNF10Q8N5U6 811 aaKnown RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 SPIRE2Q8WWL2 714 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 PTPN18Q99952 460 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 FAM118BQ9BPY3 351 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 C11orf70Q9BRQ4 267 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 TRIM7Q9C029 511 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 RABEP2Q9H5N1 569 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 TUT1Q9H6E5 874 aaKnown RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 COL11A1P12107 1806 aaPredicted RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 MCM3APO60318 1980 aa12.64□□□□□ -0.39
PTPRK-216ENST00000524481 MYH9P35579 1960 aaKnown RBP12.64□□□□□ -0.39
PTPRK-216ENST00000524481 GTPBP10A4D1E9 387 aaKnown RBP12.63□□□□□ -0.39
PTPRK-216ENST00000524481 ADCY3O60266 1144 aa12.63□□□□□ -0.39
PTPRK-216ENST00000524481 GTF2A2P52657 109 aa12.63□□□□□ -0.39
PTPRK-216ENST00000524481 CDH8P55286 799 aa12.63□□□□□ -0.39
PTPRK-216ENST00000524481 MYL6P60660 151 aa12.63□□□□□ -0.39
PTPRK-216ENST00000524481 NCOA4Q13772 614 aa12.63□□□□□ -0.39
PTPRK-216ENST00000524481 GPR142Q7Z601 462 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms