RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 GPD1LQ8N335 351 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 PLEKHO2Q8TD55 490 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 COG5Q9UP83 839 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 UBIAD1Q9Y5Z9 338 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 SCN9AQ15858 1988 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 MYO1CO00159 1063 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 HSD17B3P37058 310 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 ADCY8P40145 1251 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 HSD17B4P51659 736 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 MAGOHP61326 146 aaKnown RBP12.84□□□□□ -0.35
SMPD4-213ENST00000454468 BMT2Q1RMZ1 405 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 FAM182AQ5T1J6 154 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 ALS2CLQ60I27 953 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 CCDC137Q6PK04 289 aaKnown RBP12.84□□□□□ -0.35
SMPD4-213ENST00000454468 ZNF662Q6ZS27 426 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 RHPN2Q8IUC4 686 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 RHOT2Q8IXI1 618 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 ANKRD42Q8N9B4 389 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 TRAPPC12Q8WVT3 735 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 VIPAS39Q9H9C1 493 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 CYP26B1Q9NR63 512 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 NFKBIEO00221 500 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 DKC1O60832 514 aaKnown RBP eCLIP12.84□□□□□ -0.35
SMPD4-213ENST00000454468 GGPS1O95749 300 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 SCP2P22307 547 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 EMC2Q15006 297 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 TTMPQ5BVD1 217 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 WHAMMQ8TF30 809 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 SPIRE2Q8WWL2 714 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 PCDHB18PQ96TA0 734 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 HOXC10Q9NYD6 342 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 KCND2Q9NZV8 630 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 CYP11B1P15538 503 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 NLRP11P59045 1033 aaKnown RBP12.83□□□□□ -0.36
SMPD4-213ENST00000454468 LY6KQ17RY6 165 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 PARD3BQ8TEW8 1205 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 DCPSQ96C86 337 aaKnown RBP12.83□□□□□ -0.36
SMPD4-213ENST00000454468 PLVAPQ9BX97 442 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 NEUROG2Q9H2A3 272 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 RASSF4Q9H2L5 321 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 ERVK-5Q9HDB9 667 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 TTC7AQ9ULT0 858 aaPredicted RBP12.83□□□□□ -0.36
SMPD4-213ENST00000454468 CD2APQ9Y5K6 639 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 PCNTO95613 3336 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 GJB1P08034 283 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 VIMP08670 466 aaKnown RBP12.83□□□□□ -0.36
SMPD4-213ENST00000454468 KCNA3P22001 575 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 CYP4F22Q6NT55 531 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 ZNF365Q70YC5 407 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 C4orf19Q8IY42 314 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 OTUD6BQ8N6M0 293 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 RNF149Q8NC42 400 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 TMEM161BQ8NDZ6 487 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 MCPH1Q8NEM0 835 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 MDM1Q8TC05 714 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 ADAM22Q9P0K1 906 aa12.83□□□□□ -0.36
SMPD4-213ENST00000454468 SUCLA2Q9P2R7 463 aaPredicted RBP12.83□□□□□ -0.36
SMPD4-213ENST00000454468 GOLGA6L7A0A1B0GV03 622 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 ADM5C9JUS6 153 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 RTN2O75298 545 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 DGAT1O75907 488 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 HLA-DRAP01903 254 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 WEE2P0C1S8 567 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 RRM1P23921 792 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 ADSSP30520 456 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 PRKCIP41743 596 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 ZBTB41Q5SVQ8 909 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 VSIG10LQ86VR7 867 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 FBXO25Q8TCJ0 367 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 KREMEN1Q96MU8 473 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 FIZ1Q96SL8 496 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 MYH11P35749 1972 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 TCRBV7S2A1N4TA0A589 114 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 PHF20L1A8MW92 1017 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 CCDC188H7C350 402 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 PYGMP11217 842 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 IFT88Q13099 833 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 SUPT20HL1Q3ZLR7 823 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 SYCP2LQ5T4T6 812 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 CYFIP2Q96F07 1278 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 RNF19AQ9NV58 838 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 MAST2Q6P0Q8 1798 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 RREB1Q92766 1687 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 RGS16O15492 202 aaPredicted RBP12.82□□□□□ -0.36
SMPD4-213ENST00000454468 TMEM191BP0C7N4 346 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 PPATQ06203 517 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 PRUNE1Q86TP1 453 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 FMNL3Q8IVF7 1028 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 EPS8L1Q8TE68 723 aa12.82□□□□□ -0.36
SMPD4-213ENST00000454468 GTPBP10A4D1E9 387 aaKnown RBP12.81□□□□□ -0.36
SMPD4-213ENST00000454468 CETN2P41208 172 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 STAT5BP51692 787 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 RWDD2BP57060 319 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 ALCAMQ13740 583 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 LIN9Q5TKA1 542 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 RUFY4Q6ZNE9 571 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 MMS22LQ6ZRQ5 1243 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 JAMLQ86YT9 394 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 NRBP2Q9NSY0 501 aa12.81□□□□□ -0.36
SMPD4-213ENST00000454468 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms