RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 ZBTB33Q86T24 672 aa12.63□□□□□ -0.39
SCN9A-204ENST00000452182 XXYLT1Q8NBI6 393 aa12.63□□□□□ -0.39
SCN9A-204ENST00000452182 RSPH1Q8WYR4 309 aa12.63□□□□□ -0.39
SCN9A-204ENST00000452182 PGBD4Q96DM1 585 aa12.63□□□□□ -0.39
SCN9A-204ENST00000452182 NAT10Q9H0A0 1025 aaKnown RBP12.63□□□□□ -0.39
SCN9A-204ENST00000452182 MTIF3Q9H2K0 278 aaKnown RBP12.63□□□□□ -0.39
SCN9A-204ENST00000452182 KIAA1586Q9HCI6 787 aa12.63□□□□□ -0.39
SCN9A-204ENST00000452182 UBN1Q9NPG3 1134 aa12.63□□□□□ -0.39
SCN9A-204ENST00000452182 HSPBP1Q9NZL4 362 aa12.63□□□□□ -0.39
SCN9A-204ENST00000452182 CTNND2Q9UQB3 1225 aa12.63□□□□□ -0.39
SCN9A-204ENST00000452182 TRIM49BA6NDI0 452 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 RBAK-RBAKDNI3L0D1 243 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 CLIC2O15247 247 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 EXTL3O43909 919 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 AMHP03971 560 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 ATF7P17544 494 aaPredicted RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 NR2F2P24468 414 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 ZNF445P59923 1031 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 GPD1LQ8N335 351 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 TOP1MTQ969P6 601 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 MED15Q96RN5 788 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 BPIFA3Q9BQP9 254 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 ANP32EQ9BTT0 268 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 NXF3Q9H4D5 531 aaKnown RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 CPSF3Q9UKF6 684 aaKnown RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 PTPRSQ13332 1948 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 MAPK13O15264 365 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 CLTAP09496 248 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 STAG3L1P0CL83 205 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 KCNJ6P48051 423 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 ADAM9Q13443 819 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 CRELD2Q6UXH1 353 aaPredicted RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 C11orf57Q6ZUT1 292 aaPredicted RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 NPAS4Q8IUM7 802 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 THNSL1Q8IYQ7 743 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 CEP120Q8N960 986 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 ENOX1Q8TC92 643 aaKnown RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 PHOSPHO2Q8TCD6 241 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 MS4A3Q96HJ5 214 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 ACAP3Q96P50 834 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 DUSP9Q99956 384 aaKnown RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 MKNK1Q9BUB5 465 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 CCDC94Q9BW85 323 aaPredicted RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 DNAJC25Q9H1X3 360 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 PCIF1Q9H4Z3 704 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 TOPORSQ9NS56 1045 aaPredicted RBP12.62□□□□□ -0.39
SCN9A-204ENST00000452182 PCDHB7Q9Y5E2 793 aa12.62□□□□□ -0.39
SCN9A-204ENST00000452182 RALGAPA2Q2PPJ7 1873 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 CITO14578 2027 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 CETN3O15182 167 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 INPPL1O15357 1258 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 HOXA2O43364 376 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 EXOC3O60645 756 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 ADRB2P07550 413 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 HARSP12081 509 aaKnown RBP12.61□□□□□ -0.39
SCN9A-204ENST00000452182 ITGA4P13612 1032 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 CYP2J2P51589 502 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 STX17P56962 302 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 ANO6Q4KMQ2 910 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 LRSAM1Q6UWE0 723 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 AGMOQ6ZNB7 445 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 LRRC55Q6ZSA7 311 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 CEP63Q96MT8 703 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 SLC9A7Q96T83 725 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 FAM213AQ9BRX8 229 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 UBE2OQ9C0C9 1292 aaKnown RBP12.61□□□□□ -0.39
SCN9A-204ENST00000452182 GZF1Q9H116 711 aaPredicted RBP12.61□□□□□ -0.39
SCN9A-204ENST00000452182 PLEKHA5Q9HAU0 1116 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 SNTG2Q9NY99 539 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 CXXC1Q9P0U4 656 aaPredicted RBP12.61□□□□□ -0.39
SCN9A-204ENST00000452182 GIT1Q9Y2X7 761 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 HES2Q9Y543 173 aa12.61□□□□□ -0.39
SCN9A-204ENST00000452182 ANK1P16157 1881 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 ZNF233A6NK53 670 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 ZBBXA8MT70 800 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 FGFR1OPO95684 399 aaKnown RBP12.6□□□□□ -0.39
SCN9A-204ENST00000452182 TNFSF9P41273 254 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 ACOT2P49753 483 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 YARSP54577 528 aaKnown RBP12.6□□□□□ -0.39
SCN9A-204ENST00000452182 MCCD1P59942 119 aaPredicted RBP12.6□□□□□ -0.39
SCN9A-204ENST00000452182 DEFB103AP81534 67 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 ENPEPQ07075 957 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 SNRNP35Q16560 246 aaKnown RBP12.6□□□□□ -0.39
SCN9A-204ENST00000452182 XKR4Q5GH76 650 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 ZBTB41Q5SVQ8 909 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 SPATA1Q5VX52 437 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 ALKAL1Q6UXT8 129 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 FILIP1Q7Z7B0 1213 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 CD302Q8IX05 232 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 CSGALNACT2Q8N6G5 542 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 SAAL1Q96ER3 474 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 TSPAN18Q96SJ8 248 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 LRFN2Q9ULH4 789 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 FRMD4BQ9Y2L6 1034 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 SLC4A7Q9Y6M7 1214 aa12.6□□□□□ -0.39
SCN9A-204ENST00000452182 PDE4DIPQ5VU43 2346 aa12.59□□□□□ -0.39
SCN9A-204ENST00000452182 TTC26A0AVF1 554 aa12.59□□□□□ -0.39
SCN9A-204ENST00000452182 MEIS3P2A8K0S8 358 aa12.59□□□□□ -0.39
SCN9A-204ENST00000452182 IKBKBO14920 756 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms