RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 PI4K2BG5E9Z4 385 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 H0YCG3 227 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 STX6O43752 255 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 FAM13AO94988 1023 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 EDN1P05305 212 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 MARCKSP29966 332 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 TXLNAP40222 546 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 MATR3P43243 847 aaKnown RBP eCLIP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 CACNB1Q02641 598 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 ITIH3Q06033 890 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 RESTQ13127 1097 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 MAPK7Q13164 816 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 CBX2Q14781 532 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 KARSQ15046 597 aaKnown RBP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 FUT10Q6P4F1 479 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 SYCE2Q6PIF2 218 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 ELMSAN1Q6PJG2 1045 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 ZBTB33Q86T24 672 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 GSTCDQ8NEC7 633 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 SPIRE2Q8WWL2 714 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 RABGGTAQ92696 567 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 KHSRPQ92945 711 aaKnown RBP eCLIP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 KLHL5Q96PQ7 755 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 ACO2Q99798 780 aaKnown RBP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 TARS2Q9BW92 718 aaKnown RBP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 ZHX3Q9H4I2 956 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 TOPORSQ9NS56 1045 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-210ENST00000449684 ARHGAP28Q9P2N2 729 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 CCDC39Q9UFE4 941 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 ADAM28Q9UKQ2 775 aa17.03■□□□□ 0.32
LIMS1-210ENST00000449684 NPHP3-ACAD11A0A0J9YXS1 232 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 CASTOR2A6NHX0 329 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 DCXO43602 365 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 ADH1AP07327 375 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 CNPP09543 421 aaKnown RBP17.02■□□□□ 0.32
LIMS1-210ENST00000449684 HARSP12081 509 aaKnown RBP17.02■□□□□ 0.32
LIMS1-210ENST00000449684 EPCAMP16422 314 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 PLCG1P19174 1290 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 OSTNP61366 133 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 GRIN1Q05586 938 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 HSP90AA2PQ14568 343 aaPredicted RBP17.02■□□□□ 0.32
LIMS1-210ENST00000449684 USP41Q3LFD5 358 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 TMEM31Q5JXX7 168 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 RARS2Q5T160 578 aaKnown RBP17.02■□□□□ 0.32
LIMS1-210ENST00000449684 FAM173BQ6P4H8 233 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 TAS1R1Q7RTX1 841 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 BICD1Q96G01 975 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 RIPOR3Q96MK2 946 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 S1PR5Q9H228 398 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 ODF2LQ9ULJ1 636 aa17.02■□□□□ 0.32
LIMS1-210ENST00000449684 SF3B1O75533 1304 aaKnown RBP eCLIP17.01■□□□□ 0.318e-6■■■■■ 107
LIMS1-210ENST00000449684 TBCAO75347 108 aaKnown RBP17.01■□□□□ 0.31
LIMS1-210ENST00000449684 MCM6Q14566 821 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 SPECC1Q5M775 1068 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 MYCT1Q8N699 235 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 HASPINQ8TF76 798 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 SUSD6Q92537 303 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 RAD54LQ92698 747 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 SNX21Q969T3 373 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 FBXL18Q96ME1 805 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 NECTIN4Q96NY8 510 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 NTPCRQ9BSD7 190 aaKnown RBP17.01■□□□□ 0.31
LIMS1-210ENST00000449684 CDT1Q9H211 546 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 ADAM7Q9H2U9 754 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 TSHZ2Q9NRE2 1034 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 ANKFY1Q9P2R3 1169 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 DPP7Q9UHL4 492 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 MTMR6Q9Y217 621 aa17.01■□□□□ 0.31
LIMS1-210ENST00000449684 F8W810 466 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 PTGESO14684 152 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 MCF2P10911 925 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 GRM5P41594 1212 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 MTHFRP42898 656 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 DSG1Q02413 1049 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 ARSHQ5FYA8 562 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 GLRA4Q5JXX5 417 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 ATAT1Q5SQI0 421 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 MPZL3Q6UWV2 235 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 CEP57Q86XR8 500 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 RNF135Q8IUD6 432 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 C12orf76Q8N812 135 aaPredicted RBP17■□□□□ 0.31
LIMS1-210ENST00000449684 TMEM161BQ8NDZ6 487 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 SLC22A17Q8WUG5 538 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 RIN2Q8WYP3 895 aaPredicted RBP17■□□□□ 0.31
LIMS1-210ENST00000449684 LARP4BQ92615 738 aaKnown RBP17■□□□□ 0.31
LIMS1-210ENST00000449684 ACAP3Q96P50 834 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 GPR62Q9BZJ7 368 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 CCSER1Q9C0I3 900 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17■□□□□ 0.31
LIMS1-210ENST00000449684 CACNG4Q9UBN1 327 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 NR2E1Q9Y466 385 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 SRPRBQ9Y5M8 271 aaKnown RBP17■□□□□ 0.31
LIMS1-210ENST00000449684 MYH11P35749 1972 aa17■□□□□ 0.31
LIMS1-210ENST00000449684 FAM86C2PA6NEL3 165 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 TEX28O15482 410 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 TOM1L1O75674 476 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 MAPTP10636 758 aaKnown RBP16.99■□□□□ 0.31
LIMS1-210ENST00000449684 SP100P23497 879 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-210ENST00000449684 DDIT3P35638 169 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 CLCN4P51793 760 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms