RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 MSL3Q8N5Y2 521 aaKnown RBP27.19■■□□□ 1.94
SHOX2-201ENST00000389589 MSANTD4Q8NCY6 345 aa27.19■■□□□ 1.94
SHOX2-201ENST00000389589 ZNF516Q92618 1163 aa27.19■■□□□ 1.94
SHOX2-201ENST00000389589 KAT5Q92993 513 aa27.19■■□□□ 1.94
SHOX2-201ENST00000389589 PARD6BQ9BYG5 372 aa27.19■■□□□ 1.94
SHOX2-201ENST00000389589 ABHD16BQ9H3Z7 469 aa27.19■■□□□ 1.94
SHOX2-201ENST00000389589 RNPEPQ9H4A4 650 aa27.19■■□□□ 1.94
SHOX2-201ENST00000389589 COL1A2P08123 1366 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 GRID2IPA4D2P6 1211 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 TMEM253P0C7T8 217 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 NOP2P46087 812 aaKnown RBP27.18■■□□□ 1.94
SHOX2-201ENST00000389589 CLCN6P51797 869 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 MEI1Q5TIA1 1274 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 CREG2Q8IUH2 290 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 TRAPPC12Q8WVT3 735 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 ACO2Q99798 780 aaKnown RBP27.18■■□□□ 1.94
SHOX2-201ENST00000389589 TINF2Q9BSI4 451 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 PDE11AQ9HCR9 933 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 ZCCHC17Q9NP64 241 aaKnown RBP27.18■■□□□ 1.94
SHOX2-201ENST00000389589 ZNF185O15231 689 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 MAGEB2O15479 319 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 PPFIA4O75335 1185 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 C4BPAP04003 597 aaKnown RBP27.18■■□□□ 1.94
SHOX2-201ENST00000389589 TUBBP07437 444 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 USP8P40818 1118 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 GJC2Q5T442 439 aaPredicted RBP27.18■■□□□ 1.94
SHOX2-201ENST00000389589 NFRKBQ6P4R8 1299 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 ZNF572Q7Z3I7 529 aaPredicted RBP27.18■■□□□ 1.94
SHOX2-201ENST00000389589 AFG1LQ8WV93 481 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 CGRRF1Q99675 332 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 EPC1Q9H2F5 836 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 C1orf112Q9NSG2 853 aa27.18■■□□□ 1.94
SHOX2-201ENST00000389589 SEPT11Q9NVA2 429 aaKnown RBP27.18■■□□□ 1.94
SHOX2-201ENST00000389589 NCANO14594 1321 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 C22orf31O95567 290 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 ITIH3Q06033 890 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 WDR44Q5JSH3 913 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 CTNNBL1Q8WYA6 563 aaPredicted RBP27.17■■□□□ 1.94
SHOX2-201ENST00000389589 RNF14Q9UBS8 474 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 NCK2O43639 380 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 ITGBL1O95965 494 aaPredicted RBP27.17■■□□□ 1.94
SHOX2-201ENST00000389589 GRM1Q13255 1194 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 DUSP28Q4G0W2 176 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 METTL13Q8N6R0 699 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 ANKZF1Q9H8Y5 726 aa27.17■■□□□ 1.94
SHOX2-201ENST00000389589 INSRRP14616 1297 aa27.16■■□□□ 1.94
SHOX2-201ENST00000389589 AP3M2P53677 418 aa27.16■■□□□ 1.94
SHOX2-201ENST00000389589 POU5F1BQ06416 359 aa27.16■■□□□ 1.94
SHOX2-201ENST00000389589 IQSEC1Q6DN90 963 aa27.16■■□□□ 1.94
SHOX2-201ENST00000389589 KAT6AQ92794 2004 aa27.16■■□□□ 1.94
SHOX2-201ENST00000389589 TCHPQ9BT92 498 aa27.16■■□□□ 1.94
SHOX2-201ENST00000389589 NFKBIZQ9BYH8 718 aa27.16■■□□□ 1.94
SHOX2-201ENST00000389589 ANKRD62A6NC57 917 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 MANSC4A6NHS7 340 aaPredicted RBP27.15■■□□□ 1.94
SHOX2-201ENST00000389589 ACVR2BQ13705 512 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 TMCO3Q6UWJ1 677 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 BRSK2Q8IWQ3 736 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 NOA1Q8NC60 698 aaKnown RBP27.15■■□□□ 1.94
SHOX2-201ENST00000389589 TPCN2Q8NHX9 752 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 EPS8L1Q8TE68 723 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 COG1Q8WTW3 980 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 SLC20A1Q8WUM9 679 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 FZD8Q9H461 694 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 UTP3Q9NQZ2 479 aaKnown RBP eCLIP27.15■■□□□ 1.94
SHOX2-201ENST00000389589 CNTNAP2Q9UHC6 1331 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 ACKR2O00590 384 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 FTCDO95954 541 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 HLA-DRAP01903 254 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 PTENP60484 403 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 MCL1Q07820 350 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 BRD3Q15059 726 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 ZBTB41Q5SVQ8 909 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 TDRD10Q5VZ19 366 aaKnown RBP27.15■■□□□ 1.94
SHOX2-201ENST00000389589 RPUSD2Q8IZ73 545 aaKnown RBP27.15■■□□□ 1.94
SHOX2-201ENST00000389589 SYCE1Q8N0S2 351 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 LRRC57Q8N9N7 239 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 RFFLQ8WZ73 363 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 TATDN2Q93075 761 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 NMRK2Q9NPI5 230 aa27.15■■□□□ 1.94
SHOX2-201ENST00000389589 NOCTQ9UK39 431 aaKnown RBP27.15■■□□□ 1.94
SHOX2-201ENST00000389589 OGTO15294 1046 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 CYP26A1O43174 497 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 SGPL1O95470 568 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 PIK3CAP42336 1068 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 PAFAH1B1P43034 410 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 CLCN3P51790 818 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 WNT7BP56706 349 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 BIRC3Q13489 604 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 CCDC181Q5TID7 509 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 CHADLQ6NUI6 762 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 TSHZ1Q6ZSZ6 1077 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 DNAAF5Q86Y56 855 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 RASAL3Q86YV0 1011 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 CALR3Q96L12 384 aaKnown RBP27.14■■□□□ 1.94
SHOX2-201ENST00000389589 NLRP4Q96MN2 994 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 CCDC94Q9BW85 323 aaPredicted RBP27.14■■□□□ 1.94
SHOX2-201ENST00000389589 RAB21Q9UL25 225 aa27.14■■□□□ 1.94
SHOX2-201ENST00000389589 C11orf97A0A1B0GVM6 126 aaPredicted RBP27.13■■□□□ 1.93
SHOX2-201ENST00000389589 TMCO5BA8MYB1 307 aa27.13■■□□□ 1.93
SHOX2-201ENST00000389589 PDE2AO00408 941 aaPredicted RBP27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms