RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 GPC2Q8N158 579 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 ERLEC1Q96DZ1 483 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 CDCA5Q96FF9 252 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 MKNK1Q9BUB5 465 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 NUP85Q9BW27 656 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 KIAA1683Q9H0B3 1180 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 AK9Q5TCS8 1911 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 RGS7P49802 495 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 ZC2HC1CQ53FD0 456 aaPredicted RBP12.31□□□□□ -0.44
SYNE1-204ENST00000367248 MOB2Q70IA6 237 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 CATSPER3Q86XQ3 398 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 PDE11AQ9HCR9 933 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 KLHL8Q9P2G9 620 aaPredicted RBP12.31□□□□□ -0.44
SYNE1-204ENST00000367248 TJP2Q9UDY2 1190 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 RALAP11233 206 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 NFKBIAP25963 317 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 COG7P83436 770 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 POTEAQ6S8J7 498 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 LRRC8CQ8TDW0 803 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 RFFLQ8WZ73 363 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 TLK1Q9UKI8 766 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 CYP26A1O43174 497 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 SLC37A4O43826 429 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 ALDH1A1P00352 501 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 ARHGEF2Q92974 986 aaKnown RBP12.31□□□□□ -0.44
SYNE1-204ENST00000367248 ATP8B1O43520 1251 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 CYBBP04839 570 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 KRT7P08729 469 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 AMHR2Q16671 573 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 FSD1LQ9BXM9 530 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 IGSF9BQ9UPX0 1349 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 NWD1Q149M9 1564 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 NPTXRO95502 500 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 APOEP02649 317 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 FMO5P49326 533 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 APOBEC3HQ6NTF7 200 aaKnown RBP12.31□□□□□ -0.44
SYNE1-204ENST00000367248 CACNA2D3Q8IZS8 1091 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 KLC2Q9H0B6 622 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 CAPN11Q9UMQ6 739 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 SREBF1P36956 1147 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 EFHC2Q5JST6 749 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 ATF7IP2Q5U623 682 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 HVCN1Q96D96 273 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 SP110Q9HB58 689 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 IP6K2Q9UHH9 426 aa12.31□□□□□ -0.44
SYNE1-204ENST00000367248 A0A1B0GTH6 734 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 DFFAO00273 331 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 SP100P23497 879 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 TMEM132DQ14C87 1099 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 CENPUQ71F23 418 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 APPL2Q8NEU8 664 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 WHAMMQ8TF30 809 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 AGPAT1Q99943 283 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 CAPS2Q9BXY5 557 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 INTS9Q9NV88 658 aaKnown RBP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 SNX24Q9Y343 169 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 SYNDIG1LA6NDD5 238 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 MT-ND3P03897 115 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 IL9RQ01113 521 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 SGSM1Q2NKQ1 1148 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 KIAA1755Q5JYT7 1200 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 JADE1Q6IE81 842 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 RIOX1Q9H6W3 641 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 CXCL11O14625 94 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 ZNF286BP0CG31 522 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 KPNA2P52292 529 aaKnown RBP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 ST8SIA6P61647 398 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 IRX4P78413 519 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 NCOA4Q13772 614 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 MAP7Q14244 749 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 FKBP1CQ5VVH2 108 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 PCGF5Q86SE9 256 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 NUDCD1Q96RS6 583 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 TARS2Q9BW92 718 aaKnown RBP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 PARD6BQ9BYG5 372 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 EIF3DO15371 548 aaKnown RBP eCLIP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 CSDE1O75534 798 aaKnown RBP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 LRG1P02750 347 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 IFNAR2P48551 515 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 BCAR1P56945 870 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 GRIN1Q05586 938 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 KIZQ2M2Z5 673 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 SEZ6Q53EL9 994 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 MORC4Q8TE76 937 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 FMO2Q99518 471 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 DDX4Q9NQI0 724 aaKnown RBP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 APEX2Q9UBZ4 518 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 PODXLO00592 558 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 SCP2P22307 547 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 HABP4Q5JVS0 413 aaKnown RBP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 RHOT1Q8IXI2 618 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 YIPF2Q9BWQ6 316 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 IQGAP1P46940 1657 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 FAM47DPA6NHR8 397 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 RASGRF2O14827 1237 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 SEC31AO94979 1220 aaKnown RBP12.3□□□□□ -0.44
SYNE1-204ENST00000367248 ASPHQ12797 758 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 VPS39Q96JC1 886 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 C17orf75Q9HAS0 396 aa12.3□□□□□ -0.44
SYNE1-204ENST00000367248 ABI2Q9NYB9 513 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms