RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 TEX2Q8IWB9 1127 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 SMYD4Q8IYR2 804 aaPredicted RBP10.21□□□□□ -0.77
CUX1-203ENST00000360264 LPAR1Q92633 364 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 RUBCNLQ9H714 662 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 SMYD3Q9H7B4 428 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 NRBP1Q9UHY1 535 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 CDK12Q9NYV4 1490 aaPredicted RBP10.21□□□□□ -0.77
CUX1-203ENST00000360264 CCDC88CQ9P219 2028 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 PRKAB2O43741 272 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 RPS6KA4O75676 772 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 ZMYND10O75800 440 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 PIGHQ14442 188 aaPredicted RBP10.21□□□□□ -0.77
CUX1-203ENST00000360264 KSR1Q8IVT5 923 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.21□□□□□ -0.771e-6■■■□□ 15.3
CUX1-203ENST00000360264 UVRAGQ9P2Y5 699 aa10.21□□□□□ -0.77
CUX1-203ENST00000360264 ARAP3Q8WWN8 1544 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 ZNF467Q7Z7K2 595 aaPredicted RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 MAP2P11137 1827 aaKnown RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 GOLGA8RI6L899 631 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 GUCA1AP43080 201 aaPredicted RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 KCNH2Q12809 1159 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 COASYQ13057 564 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 DYNC1I2Q13409 638 aaKnown RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 GRM4Q14833 912 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 ALX1Q15699 326 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 COG1Q8WTW3 980 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 SMARCAD1Q9H4L7 1026 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 LAMC1P11047 1609 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 SLC16A3O15427 465 aaKnown RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 GPS1Q13098 491 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 KCNB1Q14721 858 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 CNGA3Q16281 694 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 AARS2Q5JTZ9 985 aaKnown RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 POTEAQ6S8J7 498 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 DDX17Q92841 729 aaKnown RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 GRAMD1AQ96CP6 724 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 ABCA1O95477 2261 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 HMOX2P30519 316 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 TRIP13Q15645 432 aaPredicted RBP10.21□□□□□ -0.78
CUX1-203ENST00000360264 DNAL1Q4LDG9 190 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 RCOR2Q8IZ40 523 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 ANKRD13CQ8N6S4 541 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 PPM1NQ8N819 430 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 CMTM5Q96DZ9 223 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 WRNIP1Q96S55 665 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 VPS11Q9H270 941 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 BARHL2Q9NY43 387 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 SFMBT1Q9UHJ3 866 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 PCDHA10Q9Y5I2 948 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 OVOS2A0A0G2JMS6 1433 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 OVOS2A0A0J9YW53 1432 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 OVOS2Q6IE36 1432 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 RHPN2Q8IUC4 686 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 UNC45AQ9H3U1 944 aa10.21□□□□□ -0.78
CUX1-203ENST00000360264 NDUFS3O75489 264 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 MTFR1Q15390 333 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 EFL1Q7Z2Z2 1120 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 PLEKHA8Q96JA3 519 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 SPTLC3Q9NUV7 552 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 PTPRKQ15262 1439 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 GNA15P30679 374 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 PLEKHA5Q9HAU0 1116 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 SAMSN1Q9NSI8 373 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 MAPRE1Q15691 268 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 SARM1Q6SZW1 724 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 DYNLL2Q96FJ2 89 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 IL18RAPO95256 599 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 GNL1P36915 607 aaPredicted RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 H2AFY2Q9P0M6 372 aaPredicted RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 UGGT1Q9NYU2 1555 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 MEFVO15553 781 aaPredicted RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 RPSAP08865 295 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 BRAFP15056 766 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 TBC1D10BQ4KMP7 808 aaPredicted RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 ZNF555Q8NEP9 628 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 SH3RF3Q8TEJ3 882 aaPredicted RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 NMRK1Q9NWW6 199 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 P4HBP07237 508 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 IMPDH2P12268 514 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 VCPP55072 806 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 ANKRD40Q6AI12 368 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 PID1Q7Z2X4 250 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 STN1Q9H668 368 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 KCNQ4P56696 695 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 NCOA4Q13772 614 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 SGSM1Q2NKQ1 1148 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 SETD3Q86TU7 594 aaPredicted RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 STAMBPL1Q96FJ0 436 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 CASS4Q9NQ75 786 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 GMNCA6NCL1 334 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 ZSCAN9O15535 394 aaPredicted RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 TCF3P15923 654 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 SLC9A1P19634 815 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 C4BPBP20851 252 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 ATL2Q8NHH9 583 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 EEF2KMTQ96G04 330 aa10.2□□□□□ -0.78
CUX1-203ENST00000360264 MRPL48Q96GC5 212 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 NLRP11P59045 1033 aaKnown RBP10.2□□□□□ -0.78
CUX1-203ENST00000360264 SNAPC2Q13487 334 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms