RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 PCNX4Q63HM2 1172 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 RAB44Q7Z6P3 723 aaPredicted RBP15.84■□□□□ 0.13
COL17A1-201ENST00000353479 CHP1Q99653 195 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 SAYSD1Q9NPB0 183 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 FHOD1Q9Y613 1164 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 SUPT20HL2P0C7V6 817 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 PMLP29590 882 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 RBBP8NLQ8NC74 664 aaPredicted RBP15.84■□□□□ 0.13
COL17A1-201ENST00000353479 BCAS4Q8TDM0 211 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 PDCD6IPQ8WUM4 868 aaKnown RBP15.84■□□□□ 0.13
COL17A1-201ENST00000353479 TTC7AQ9ULT0 858 aaPredicted RBP15.84■□□□□ 0.13
COL17A1-201ENST00000353479 HPCAL4Q9UM19 191 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 RASGRF2O14827 1237 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 ATP6V1E2Q96A05 226 aa15.84■□□□□ 0.13
COL17A1-201ENST00000353479 CCDC151A5D8V7 595 aa15.83■□□□□ 0.13
COL17A1-201ENST00000353479 C1orf228Q6PIY5 440 aa15.83■□□□□ 0.13
COL17A1-201ENST00000353479 ABCB6Q9NP58 842 aa15.83■□□□□ 0.13
COL17A1-201ENST00000353479 LMCD1Q9NZU5 365 aa15.83■□□□□ 0.13
COL17A1-201ENST00000353479 GOLGA8MH3BSY2 632 aa15.83■□□□□ 0.13
COL17A1-201ENST00000353479 PARD3BQ8TEW8 1205 aa15.83■□□□□ 0.13
COL17A1-201ENST00000353479 RECQLP46063 649 aaPredicted RBP15.83■□□□□ 0.12
COL17A1-201ENST00000353479 NOTUMQ6P988 496 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 C18orf8Q96DM3 657 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 NUDCD1Q96RS6 583 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 PDCD2LQ9BRP1 358 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 FSD1LQ9BXM9 530 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 VWA5AO00534 786 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 CD4P01730 458 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 APOEP02649 317 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 CALRP27797 417 aaKnown RBP15.83■□□□□ 0.12
COL17A1-201ENST00000353479 ENGASEQ8NFI3 743 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 PI4K2AQ9BTU6 479 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 WNT8AQ9H1J5 351 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 PPP1R3GB7ZBB8 358 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 KRT3P12035 628 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 CLCN3P51790 818 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 BCAR1P56945 870 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 NR1I3Q14994 352 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 Q4G0T1 1027 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 GLB1LQ6UWU2 654 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 TMEM8AQ9HCN3 771 aa15.83■□□□□ 0.12
COL17A1-201ENST00000353479 EVI5O60447 810 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 THPOP40225 353 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 CDH6P55285 790 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 SEZ6Q53EL9 994 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 VIL1P09327 827 aaKnown RBP15.82■□□□□ 0.12
COL17A1-201ENST00000353479 ZKSCAN8Q15776 578 aaPredicted RBP15.82■□□□□ 0.12
COL17A1-201ENST00000353479 SAMD3Q8N6K7 520 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 DDX56Q9NY93 547 aaKnown RBP15.82■□□□□ 0.12
COL17A1-201ENST00000353479 RALAP11233 206 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 KLK7P49862 253 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 RASSF2P50749 326 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 FXR1P51114 621 aaKnown RBP eCLIP15.82■□□□□ 0.12
COL17A1-201ENST00000353479 ARL4CP56559 192 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 NOP14P78316 857 aaKnown RBP15.82■□□□□ 0.12
COL17A1-201ENST00000353479 TAP1Q03518 808 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 HVCN1Q96D96 273 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 DDX47Q9H0S4 455 aaKnown RBP15.82■□□□□ 0.12
COL17A1-201ENST00000353479 STK38LQ9Y2H1 464 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 GPC4O75487 556 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 WEE2P0C1S8 567 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 SNRPFP62306 86 aaKnown RBP15.82■□□□□ 0.12
COL17A1-201ENST00000353479 CDK17Q00537 523 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 AP1B1Q10567 949 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 ZNF449Q6P9G9 518 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 SLC38A7Q9NVC3 462 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 FAM198AQ9UFP1 575 aa15.82■□□□□ 0.12
COL17A1-201ENST00000353479 ARHGAP42A6NI28 874 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 PRPF31Q8WWY3 499 aaKnown RBP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 AGO4Q9HCK5 861 aaKnown RBP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 AGPAT3Q9NRZ7 376 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 FAM49BQ9NUQ9 324 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 CXCL11O14625 94 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 TFRCP02786 760 aaKnown RBP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 CLCN6P51797 869 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 HEATR6Q6AI08 1181 aaKnown RBP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 SPOPLQ6IQ16 392 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 CERS5Q8N5B7 392 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 SPON2Q9BUD6 331 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 C17orf75Q9HAS0 396 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 NOVA2Q9UNW9 492 aaKnown RBP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 ASPHQ12797 758 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 PGM5Q15124 567 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 SLC18A3Q16572 532 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 GLE1Q53GS7 698 aaKnown RBP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 MORC4Q8TE76 937 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 MKNK1Q9BUB5 465 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 PCDHAC2Q9Y5I4 1007 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 GAS2O43903 313 aaKnown RBP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 MMS22LQ6ZRQ5 1243 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 NDUFAF2Q8N183 169 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 CDCA5Q96FF9 252 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 IFT43Q96FT9 208 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 P2RX7Q99572 595 aaKnown RBP15.81■□□□□ 0.12
COL17A1-201ENST00000353479 AGXT2Q9BYV1 514 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 KLHL11Q9NVR0 708 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 RIC1Q4ADV7 1423 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 OR1G1P47890 313 aa15.81■□□□□ 0.12
COL17A1-201ENST00000353479 NNTQ13423 1086 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms