RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 STARD3NLO95772 234 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 GNB3P16520 340 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 CDH2P19022 906 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 RRM2P31350 389 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SKP1P63208 163 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 OTUD4Q01804 1114 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 MXD4Q14582 209 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 STAT4Q14765 748 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ATL2Q8NHH9 583 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TTC8Q8TAM2 541 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 BRSK1Q8TDC3 778 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 MIEF2Q96C03 454 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 GPN1Q9HCN4 374 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SETD4Q9NVD3 440 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PRKAG2Q9UGJ0 569 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 KIF27Q86VH2 1401 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 RTL1A6NKG5 1358 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PPP1R2P9O14990 202 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PNPP00491 289 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 FGRP09769 529 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 KPNA1P52294 538 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 OSTNP61366 133 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 EXOSC9Q06265 439 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TUBA3CQ13748 450 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SEMA3AQ14563 771 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PKN3Q6P5Z2 889 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 HIC2Q96JB3 615 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 FBRSQ9HAH7 460 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 CLRN2A0PK11 232 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 LRRC14BA6NHZ5 514 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF213O14771 459 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 HUS1O60921 280 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ZCCHC18P0CG32 403 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 CDC27P30260 824 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 RAB5BP61020 215 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PSME1Q06323 249 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SMAD1Q15797 465 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TMEM67Q5HYA8 995 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PCDH19Q8TAB3 1148 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TEKT3Q9BXF9 490 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 RHOBTB2Q9BYZ6 727 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 CEP44Q9C0F1 390 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 MBIPQ9NS73 344 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PCSK1NQ9UHG2 260 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ENOPH1Q9UHY7 261 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 DMTF1Q9Y222 760 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF451Q9Y4E5 1061 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PMF1-BGLAPU3KQ54 211 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TRPC5OSA6NMA1 111 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 H7C0S8 307 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ATP6V1G1O75348 118 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ACADLP28330 430 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 CD40LGP29965 261 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MLLT6P55198 1093 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ARPC4P59998 168 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 SLFN12LQ6IEE8 588 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 IRGCQ6NXR0 463 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 AFTPHQ6ULP2 937 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 COPS6Q7L5N1 327 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 TESK2Q96S53 571 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 CLCC1Q96S66 551 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 SLF1Q9BQI6 1058 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 TMED9Q9BVK6 235 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF350Q9GZX5 532 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 AASDHPPTQ9NRN7 309 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 TBC1D22BQ9NU19 505 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 BACH1O14867 736 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 KMOO15229 486 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ATP8B1O43520 1251 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 SSX4O60224 188 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 NOS1APO75052 506 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 AFPP02771 609 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 SERPIND1P05546 499 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ETFRF1Q6IPR1 90 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF280DQ6N043 979 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 DEF8Q6ZN54 512 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 PROSER2Q86WR7 435 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 CRLF3Q8IUI8 442 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF366Q8N895 744 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MYRIPQ8NFW9 859 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 KIF1BPQ96EK5 621 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 TMEM60Q9H2L4 133 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 EPS8L2Q9H6S3 715 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 DDX18Q9NVP1 670 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 FAM32AQ9Y421 112 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 SNX13Q9Y5W8 968 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MAGEA13PA6NCF6 341 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 FAM83GA6ND36 823 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 CBY3A6NI87 242 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ARHGEF33A8MVX0 844 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MAP3K13O43283 966 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 PER3P56645 1201 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 PPARAQ07869 468 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 POTEAQ6S8J7 498 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 NLRP10Q86W26 655 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 SHCBP1Q8NEM2 672 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 IPCEF1Q8WWN9 437 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 DGCR14Q96DF8 476 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms