RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 SEPT14Q6ZU15 432 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 HOOK3Q86VS8 718 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 KIRREL3Q8IZU9 778 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 ANKRD42Q8N9B4 389 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 DHX38Q92620 1227 aaKnown RBP10.79□□□□□ -0.68
LIG3-201ENST00000262327 FAM129AQ9BZQ8 928 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 VEZTQ9HBM0 779 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 TOPORSQ9NS56 1045 aaPredicted RBP10.79□□□□□ -0.68
LIG3-201ENST00000262327 DMAC2Q9NW81 257 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 FRMPD4Q14CM0 1322 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 ATXN2Q99700 1313 aaKnown RBP10.79□□□□□ -0.68
LIG3-201ENST00000262327 PHF2O75151 1096 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 CLSTN1O94985 981 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 POLR2MP0CAP2 368 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 RARAP10276 462 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 VAMP7P51809 220 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 MAP3K10Q02779 954 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 CEP55Q53EZ4 464 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 PARP9Q8IXQ6 854 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 UBL4BQ8N7F7 174 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 CCDC197Q8NCU1 140 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 TCP11Q8WWU5 503 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 CCT6BQ92526 530 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 ZSWIM1Q9BR11 485 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 PGAP2Q9UHJ9 254 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 BAIAP2L1Q9UHR4 511 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 TRPC6Q9Y210 931 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 IPO5O00410 1097 aaKnown RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 BCRP11274 1271 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 GPC5P78333 572 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 SEL1L2Q5TEA6 688 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 MIGA2Q7L4E1 593 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 TBC1D1Q86TI0 1168 aaPredicted RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 PRUNE1Q86TP1 453 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 PNMA8AQ86V59 439 aaPredicted RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 ATXN2LQ8WWM7 1075 aaKnown RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 NACC1Q96RE7 527 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 NAP1L3Q99457 506 aaPredicted RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 NUP85Q9BW27 656 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 GLIS2Q9BZE0 524 aaPredicted RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIG3-201ENST00000262327 TUFT1Q9NNX1 390 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 HOMER2Q9NSB8 354 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 TBK1Q9UHD2 729 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 RASAL2Q9UJF2 1139 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 TTC7AQ9ULT0 858 aaPredicted RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 SYNPO2Q9UMS6 1093 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 SLC16A4O15374 487 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 CLTAP09496 248 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 YBX3P16989 372 aaKnown RBP eCLIP10.78□□□□□ -0.681e-6■■□□□ 11.7
LIG3-201ENST00000262327 CHRNB2P17787 502 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 SOX10P56693 466 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 KIF22Q14807 665 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 ZKSCAN8Q15776 578 aaPredicted RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 GDAP1Q8TB36 358 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 DYDC1Q8WWB3 177 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 ZNF653Q96CK0 615 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 ZNF317Q96PQ6 595 aaPredicted RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 WDR11Q9BZH6 1224 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 ABCF3Q9NUQ8 709 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 GPRC5DQ9NZD1 345 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 MYH11P35749 1972 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 C5orf60A6NFR6 353 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 CCDC169A6NNP5 214 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 RASGRF2O14827 1237 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 CHUKO15111 745 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 PAEPP09466 180 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 ANXA13P27216 316 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 ELF1P32519 619 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 GJC1P36383 396 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 EIF3BP55884 814 aaKnown RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 SNCBQ16143 134 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 C1orf220Q5T0J3 134 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 CBWD2Q8IUF1 395 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 IL31RAQ8NI17 732 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 ZNF564Q8TBZ8 553 aaPredicted RBP10.78□□□□□ -0.68
LIG3-201ENST00000262327 SEMA4DQ92854 862 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 SLC5A5Q92911 643 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 GMCL1Q96IK5 515 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 KREMEN1Q96MU8 473 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 PI4K2AQ9BTU6 479 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 KCNK9Q9NPC2 374 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 USP20Q9Y2K6 914 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 SBF1O95248 1867 aa10.78□□□□□ -0.68
LIG3-201ENST00000262327 ATAD5Q96QE3 1844 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 FAM187AA6NFU0 413 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 CCT8L1PA6NM43 557 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 RIPK2O43353 540 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 ADRB2P07550 413 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 RPSAP08865 295 aaKnown RBP10.77□□□□□ -0.68
LIG3-201ENST00000262327 CHKAP35790 457 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 MMP13P45452 471 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 PEX5P50542 639 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 DHX34Q14147 1143 aaKnown RBP10.77□□□□□ -0.68
LIG3-201ENST00000262327 RHOT2Q8IXI1 618 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 THOC1Q96FV9 657 aaKnown RBP10.77□□□□□ -0.68
LIG3-201ENST00000262327 MKNK1Q9BUB5 465 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 HSPBP1Q9NZL4 362 aa10.77□□□□□ -0.68
LIG3-201ENST00000262327 COILP38432 576 aaPredicted RBP10.77□□□□□ -0.69
LIG3-201ENST00000262327 PEX3P56589 373 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms