RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 OSBPL8Q9BZF1 889 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 SKIP12755 728 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 COILP38432 576 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-201ENST00000249837 DNAJC3Q13217 504 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 MTMR1Q13613 665 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 KRT39Q6A163 491 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 ACSF2Q96CM8 615 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-201ENST00000249837 APEX2Q9UBZ4 518 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 TNS2Q63HR2 1409 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 COPEO14579 308 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 NCF2P19878 526 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-201ENST00000249837 RPA1P27694 616 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 C7orf31Q8N865 590 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 SPATA20Q8TB22 786 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 LRRC37BQ96QE4 947 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 TRIM6Q9C030 488 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-201ENST00000249837 KDM3BQ7LBC6 1761 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 ATP5HO75947 161 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 MARCKSL1P49006 195 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 ACOT2P49753 483 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 CAV1Q03135 178 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 QTRT2Q9H974 415 aaKnown RBP4.91□□□□□ -1.62
VPS13C-201ENST00000249837 FEM1BQ9UK73 627 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 GYG2O15488 501 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 CDO1Q16878 200 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 TMEM35BQ8NCS4 154 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 MCPH1Q8NEM0 835 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 ATG4AQ8WYN0 398 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 TNFRSF25Q93038 417 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 RBM15Q96T37 977 aaKnown RBP eCLIP4.91□□□□□ -1.62
VPS13C-201ENST00000249837 SLC13A1Q9BZW2 595 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 SEMA4AQ9H3S1 761 aa4.91□□□□□ -1.62
VPS13C-201ENST00000249837 EML1O00423 815 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 CALB1P05937 261 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 JAK3P52333 1124 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 COL23A1Q86Y22 540 aaPredicted RBP4.9□□□□□ -1.62
VPS13C-201ENST00000249837 SNF8Q96H20 258 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 PABPC3Q9H361 631 aaKnown RBP4.9□□□□□ -1.62
VPS13C-201ENST00000249837 RGPD1P0DJD0 1748 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 ARHGAP23Q9P227 1491 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 MAGEA4P43358 317 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 YARSP54577 528 aaKnown RBP4.9□□□□□ -1.62
VPS13C-201ENST00000249837 CBWD2Q8IUF1 395 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 INPP5FQ9Y2H2 1132 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 PFASO15067 1338 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 SPECC1L-ADORA2AF8WAN1 911 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 PIK3R2O00459 728 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 CFLARO15519 480 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 ARL4CP56559 192 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 MAP7D1Q3KQU3 841 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 CAPRIN2Q6IMN6 1127 aaKnown RBP4.9□□□□□ -1.62
VPS13C-201ENST00000249837 LRRC55Q6ZSA7 311 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 TRIM42Q8IWZ5 723 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 THNSL1Q8IYQ7 743 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 CCHCR1Q8TD31 782 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 POP1Q99575 1024 aaKnown RBP4.9□□□□□ -1.62
VPS13C-201ENST00000249837 GPRC5CQ9NQ84 441 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 RNF146Q9NTX7 359 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 HAUS5O94927 633 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 ZBED1O96006 694 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 RHOT1Q8IXI2 618 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 MIPOL1Q8TD10 442 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 LMO7Q8WWI1 1683 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 SMARCA1P28370 1054 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 CASP5P51878 434 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 FAM160B1Q5W0V3 765 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 ARMC9Q7Z3E5 817 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 ATL2Q8NHH9 583 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 ANKRD36BP1Q96IX9 119 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 RBM41Q96IZ5 413 aaKnown RBP4.9□□□□□ -1.62
VPS13C-201ENST00000249837 CARD9Q9H257 536 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 GDF3Q9NR23 364 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 ZFP69BQ9UJL9 534 aa4.9□□□□□ -1.62
VPS13C-201ENST00000249837 FAM47DPA6NHR8 397 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 PJA2O43164 708 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 KITP10721 976 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 ECM1Q16610 540 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 CYB5D1Q6P9G0 228 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 TRIM50Q86XT4 487 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 HESX1Q9UBX0 185 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 RASSF10A6NK89 507 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 PRPSAP2O60256 369 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 HLA-DRAP01903 254 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 SHBGP04278 402 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 TMPRSS15P98073 1019 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 PDE1BQ01064 536 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 RC3H1Q5TC82 1133 aaKnown RBP4.9□□□□□ -1.63
VPS13C-201ENST00000249837 SLC7A3Q8WY07 619 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 STAMBPL1Q96FJ0 436 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 RTFDC1Q9BY42 306 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-201ENST00000249837 VCPKMTQ9H867 229 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 SCOCQ9UIL1 159 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 NALCNQ8IZF0 1738 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 P4HBP07237 508 aaKnown RBP4.9□□□□□ -1.63
VPS13C-201ENST00000249837 NQO1P15559 274 aaKnown RBP4.9□□□□□ -1.63
VPS13C-201ENST00000249837 GNPTABQ3T906 1256 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 SLC47A2Q86VL8 602 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 SP8Q8IXZ3 490 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 MASTLQ96GX5 879 aa4.9□□□□□ -1.63
VPS13C-201ENST00000249837 SMYD2Q9NRG4 433 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms