RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RAT1	YOR048C	FMP27	Q06179	2628 aa		4.82	□□□□□ -1.64
RAT1	YOR048C	YFR010W-A	P0C5N0	62 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	YLL053C	P0CD98	152 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	HOP1	P20050	605 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	ADH7	P25377	361 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	YNK1	P36010	153 aa	Known RBP	4.81	□□□□□ -1.64
RAT1	YOR048C	POP8	P38208	133 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	AIM46	P38885	310 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	GCV3	P39726	170 aa	Predicted RBP	4.81	□□□□□ -1.64
RAT1	YOR048C	SMK1	P41808	388 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	FLC3	P53121	802 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	GPG1	P53130	126 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	MPA43	P53583	542 aa	Predicted RBP	4.81	□□□□□ -1.64
RAT1	YOR048C	TEX1	P53851	422 aa	Known RBP	4.81	□□□□□ -1.64
RAT1	YOR048C	MTQ2	Q03920	221 aa	Predicted RBP	4.81	□□□□□ -1.64
RAT1	YOR048C	HIS5	P07172	385 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	ECT1	P33412	323 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	LSM1	P47017	172 aa	Known RBP	4.81	□□□□□ -1.64
RAT1	YOR048C	OGG1	P53397	376 aa	Predicted RBP	4.81	□□□□□ -1.64
RAT1	YOR048C	CCE1	Q03702	353 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	SPC19	Q03954	165 aa		4.81	□□□□□ -1.64
RAT1	YOR048C	RPB3	P16370	318 aa	Known RBP	4.8	□□□□□ -1.64
RAT1	YOR048C	PRO1	P32264	428 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	ISC10	P32645	267 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	GIP2	P40036	548 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	BXI1	P48558	297 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	YGR066C	P53242	292 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	BNA7	Q04066	261 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	ISR1	Q06098	443 aa	Known RBP	4.8	□□□□□ -1.64
RAT1	YOR048C	ORT1	Q12375	292 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	TFB5	Q3E7C1	72 aa	Predicted RBP	4.8	□□□□□ -1.64
RAT1	YOR048C	HNM1	P19807	563 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	DCG1	P32460	244 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	SDS24	P38314	527 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	RIP-Chip
RAT1	YOR048C	BMT5	P40493	336 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	ICE2	P40499	491 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	HIS6	P40545	261 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	XYL2	Q07993	356 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	OPI10	Q08202	246 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	PSF1	Q12488	208 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	HOM3	P10869	527 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	DPM1	P14020	267 aa	Known RBP	4.8	□□□□□ -1.64
RAT1	YOR048C	YIL108W	P40483	696 aa	Known RBP	4.8	□□□□□ -1.64
RAT1	YOR048C	CIS3	P47001	227 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	GPI14	P47088	403 aa	Known RBP	4.8	□□□□□ -1.64
RAT1	YOR048C	CTF19	Q02732	369 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	EST3	Q03096	181 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	RAD28	Q12021	506 aa		4.8	□□□□□ -1.64
RAT1	YOR048C	DET1	Q99288	334 aa	Known RBP	4.8	□□□□□ -1.64
RAT1	YOR048C	PPH21	P23594	369 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	SSH4	P32343	579 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	CHK1	P38147	527 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	PRS3	P38689	320 aa	Known RBP	4.79	□□□□□ -1.64
RAT1	YOR048C	TIF34	P40217	347 aa	Known RBP	4.79	□□□□□ -1.64
RAT1	YOR048C	DUG1	P43616	481 aa	Known RBP	4.79	□□□□□ -1.64
RAT1	YOR048C	YGL101W	P53144	215 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	ALG9	P53868	555 aa	Known RBP	4.79	□□□□□ -1.64
RAT1	YOR048C	ATG38	Q05789	226 aa	Known RBP	4.79	□□□□□ -1.64
RAT1	YOR048C	HDA2	Q06629	674 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	HO	P09932	586 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	PET18	P25362	215 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	YCR101C	P25607	182 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	LDS1	P31379	325 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	OSW5	P40219	148 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	PMT3	P47190	753 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	PET191	Q02772	108 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	ADD37	Q03233	198 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	DFG5	Q05031	458 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	PEX30	Q06169	523 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	YLR146W-A	Q2V2P1	62 aa		4.79	□□□□□ -1.64
RAT1	YOR048C	OPI3	P05375	206 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	HOG1	P32485	435 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	ECM15	P35195	104 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	YJR115W	P47152	169 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	BER1	Q06688	274 aa	Known RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	TRM13	Q12383	476 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	RRI1	Q12468	440 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	HBN1	Q96VH4	193 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	SSA3	P09435	649 aa	Known RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	NAM2	P11325	894 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	KRR1	P25586	316 aa	Predicted RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	COQ2	P32378	372 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	ARO4	P32449	370 aa	Known RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	ATG8	P38182	117 aa	RIP-Chip data	4.78	□□□□□ -1.64	not detected
RAT1	YOR048C	NOP16	P40007	231 aa	Known RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	MOB1	P40484	314 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	HXT11	P54862	567 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	YMR279C	Q03263	540 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	YML018C	Q03730	393 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	YPR117W	Q06116	2489 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	CTA1	P15202	515 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	MEK1	P24719	497 aa	Predicted RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	SSH1	P38353	490 aa	Known RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	EMC5	P40540	141 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	ASK10	P48361	1146 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	YGR250C	P53316	781 aa	Known RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	YNR061C	P53747	219 aa		4.78	□□□□□ -1.64
RAT1	YOR048C	FMP41	P53889	259 aa	Known RBP	4.78	□□□□□ -1.64
RAT1	YOR048C	APM1	Q00776	475 aa	Predicted RBP	4.78	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 32.5 ms